View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_56 (Length: 367)
Name: NF17203_low_56
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 79 - 352
Target Start/End: Original strand, 28982923 - 28983196
Alignment:
| Q |
79 |
ttaatataatgaataatagtggatagttgcttgcccaaacaaacacccaaacaagaacttattccaacactcctttggattaacttctttcgacgtttct |
178 |
Q |
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| T |
28982923 |
ttaatataatgaataatcgtggatagttgcttgcccaaccaaacacccaaagaagaacttattccaacactcctttggattaacttctttcgacgtttct |
28983022 |
T |
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| Q |
179 |
ttgaaatttgacggcagagtcccttgcaaacnnnnnnncagtttttcaaactaatttccaactaattattaatagtaaaattcatctatcatatcacatt |
278 |
Q |
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| T |
28983023 |
ttgaaatttgacggcagagtcctttgcaaagaaaaaaacagtttttcaaactaatttccaactaattattaatagtaaaattcatctatcatatcacatt |
28983122 |
T |
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| Q |
279 |
taaaaagaacattacttctccaaaatgaaataatctatacgtaaacgcaataccatcactattcactaacatat |
352 |
Q |
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| T |
28983123 |
taaaaagaacattacttctccaaaatgaaataatctatacgtaaacgcaataccatcactattcactaacatat |
28983196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 28982654 - 28982729
Alignment:
| Q |
12 |
atgaataagtgacacatagaaaagatcaattaggatcttaaaacaataatttattgtttcaatgtaattaatataa |
87 |
Q |
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| T |
28982654 |
atgaataagtgacacatagaaaagatcaattaggatcttaaaacaataatttattgtttcaatataattaatataa |
28982729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 28978094 - 28978139
Alignment:
| Q |
163 |
ttctttcgacgtttctttgaaatttgacggcagagtcccttgcaaa |
208 |
Q |
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| T |
28978094 |
ttctttcgatgtttctttcaaatttgacggcatagtcccctgcaaa |
28978139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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