View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_57 (Length: 358)
Name: NF17203_low_57
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 78 - 340
Target Start/End: Original strand, 35900799 - 35901066
Alignment:
| Q |
78 |
tttttgcttggtttatatcccaaattgttgggatcagtgaaaaagtatgaacattttgttcttannnnnnngtgcgtctgatcctctttgtctgaataat |
177 |
Q |
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| T |
35900799 |
tttttgcttggtttatatcccaaattgttgggatcagtgaaaaagtatgaacattttgttcttatttttttgtgcgtctgatcctctttgactgaataat |
35900898 |
T |
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| Q |
178 |
tcagtatttcaattcaaagatctgttattgaggtttgaatgtggtgaata-----tttgtgttcttgactgttcttacgctcccgaaggtgacaggcaaa |
272 |
Q |
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| T |
35900899 |
tcagtatttcaattcaaagatctgttattgaggtttgaatgtggtgaatactgtatttgtgttcttgactgttcttacgctcccgaaggtgacaggcaaa |
35900998 |
T |
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| Q |
273 |
agattggggccatattaatattgtgacaatgaaatggtttgatgaatctattgctcaaagaggtaact |
340 |
Q |
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| T |
35900999 |
agattggagccatattaatattgtgacagtgaaatggtttgatgaatctattgctcaaagaggtaact |
35901066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 110 - 340
Target Start/End: Original strand, 35884617 - 35884856
Alignment:
| Q |
110 |
atcagtgaaaaagtatgaacattttgttcttannnnnnngtgcgtctgatcctctttgtctgaataattcagtatttcaattcaaagatctgttattgag |
209 |
Q |
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| T |
35884617 |
atcagtgaaaaagtatgaatgttttgttcttattttct-gtgcgtctgatcctctctgactgaataattaagtatttcaattcaaagatttgttattgag |
35884715 |
T |
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| Q |
210 |
gtttgaatgtggtgaatatttgtgttcttgactgttcttacgctcccgaaggtgaca----------ggcaaaagattggggccatattaatattgtgac |
299 |
Q |
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| T |
35884716 |
gtttgaacgtggtaaatatttgtgttcttgactgttcttacgctcctgaaggtgataagcataagatggcaaaactttggggacatattaatattgtgac |
35884815 |
T |
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| Q |
300 |
aatgaaatggtttgatgaatctattgctcaaagaggtaact |
340 |
Q |
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| T |
35884816 |
aatgaaatggtttgatgaatctattgctcaaagaggtaact |
35884856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 10209646 - 10209573
Alignment:
| Q |
267 |
ggcaaaagattggggccatattaatattgtgacaatgaaatggtttgatgaatctattgctcaaagaggtaact |
340 |
Q |
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| T |
10209646 |
ggcaaaacgttggggccacattcatattgtcacaatgaaatggtttgatcaatctgttgctcgaagaggtaact |
10209573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 10209763 - 10209712
Alignment:
| Q |
149 |
gtgcgtctgatcctctttgtctgaataattcagtatttcaattcaaagatct |
200 |
Q |
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| T |
10209763 |
gtgcatctgatcctctctgactgaataattcagtatttcaattcaaagatct |
10209712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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