View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_58 (Length: 346)
Name: NF17203_low_58
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 48412077 - 48411763
Alignment:
| Q |
14 |
agaccaggagtttaaccataatgctctcttcaagaaaaggtaannnnnnnnn-attaaatagttagaccatcaagtattcattcataatgatgtctttga |
112 |
Q |
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| T |
48412077 |
agaccaggagtttaaccacaatgctctcttcaagaaaaggtaatattttgtttattaaatagttagaccatcaagtattcat----aatgatgtctttga |
48411982 |
T |
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| Q |
113 |
actcttaattttgcttnnnnnnntgacaattgtagtaatacggagagaatgttgttttgtttctttcatgtgtatgaattgtcaaggccctagcttgaac |
212 |
Q |
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| T |
48411981 |
actcttaattttgcttaaaaaaatgacaattgtagtaatacggagagaatgttgttttgtttctttcatgtgtatgaattgtcaaggccctagcttgaac |
48411882 |
T |
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| Q |
213 |
ttatttcaatatgtaatcatttgaatttgtggtgcagaaagagcatgcctaaatggaaggagcaagtgaagatttgcacaaacacaggattatctgaagg |
312 |
Q |
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| T |
48411881 |
ttatttcaatatgtaatcatttgaatttgtggtgcagaaagagcatgcctaaatggaaggagcaagtgaagatttgcacaaacacaggattatctgaagg |
48411782 |
T |
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| Q |
313 |
gtctttggatgatgaatat |
331 |
Q |
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||||||||||||||||||| |
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| T |
48411781 |
gtctttggatgatgaatat |
48411763 |
T |
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