View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_61 (Length: 345)
Name: NF17203_low_61
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 44629959 - 44629627
Alignment:
| Q |
1 |
aatacacccatcaaatttaaaacttatgtaacaaatacccctcattaccttaattagtcctaacatatgtaatttaatatgatgaagacaaatattcttc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629959 |
aatacacccttcaaatttaaaacttatgtaacaaatacccctcattaccttaattagtcctaacatatgtaatttaatatgatgaagacaaatattcttc |
44629860 |
T |
|
| Q |
101 |
attcaacctgcaactctgaaactgtcataggcacataataacgcatcaaagcttctgtttctttttgtatttcg---ctgcctctnnnnnnnttatgcta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
44629859 |
attcaacctgcaactctgaaactgtcataggcacataataacgcatcaaagcttctgtttctttttgtatttcgctactgcctctaaaaaaaatatgcta |
44629760 |
T |
|
| Q |
198 |
atctctctcttctggatttcattactctgtatcattttagatttcatcttccaaagcaagtcaaacagaatactttagtatatatttcatgaatcaaata |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
44629759 |
atctctctcttctggatttcattactctgtatcattttagatttcatcttccaaagcaagtcaaaaagaatactttagtatatatttcatgaatcaatta |
44629660 |
T |
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| Q |
298 |
acactttaaaacaagccaagccaccgtcctttg |
330 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44629659 |
acactttaaaacaagccaagccaccgtcctttg |
44629627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 47730095 - 47730012
Alignment:
| Q |
43 |
cattaccttaattagtcctaacatatgtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcata |
129 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
47730095 |
cattaccttaattactcctaacatatataattaaatatcatgaaggcaaata---ttcattcaacctgcaactctgaaactgtcata |
47730012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 21268083 - 21268115
Alignment:
| Q |
11 |
tcaaatttaaaacttatgtaacaaatacccctc |
43 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
21268083 |
tcaaatttaaaacttatgtagcaaatacccctc |
21268115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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