View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_69 (Length: 321)
Name: NF17203_low_69
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30503763 - 30504066
Alignment:
| Q |
1 |
ggcaattgcaattgcattggttgttgctgctgaagctgaagctgttgtggttgttgttgtggtggacgtttccttttcttcttctcataactaatacctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503763 |
ggcaattgcaattgcattggttgttgctgctgaagctgaagctgttgtggttgttgttgtggtggacgtttccttttcttcttctcataactaatacctc |
30503862 |
T |
|
| Q |
101 |
ttgctttggattgaagatcacgaacctcacgaaggtaaagtctaacagctctagcaccaaatggatttgtttctggcttccctccattttcctcaaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503863 |
ttgctttggattgaagatcacgaacctcacgaaggtaaagtctaacagctctagcaccaaatggatttgtttctggcttccctccattttcctcaaaagc |
30503962 |
T |
|
| Q |
201 |
tgcccttaaacgacctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagggtttggatgtccatagaatggacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503963 |
tgcccttaaacgacctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagggtttggatgtccatagaatggacaa |
30504062 |
T |
|
| Q |
301 |
attg |
304 |
Q |
| |
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|||| |
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| T |
30504063 |
attg |
30504066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 302
Target Start/End: Complemental strand, 15970559 - 15970333
Alignment:
| Q |
76 |
ttcttcttctcataactaatacctcttgctttggattgaagatcacgaacctcacgaaggtaaagtctaacagctctagcaccaaatggatttgtttctg |
175 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | |||| ||| | ||| || ||||||||||||| |||||| | |||||||| ||||| | ||||| |
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|
| T |
15970559 |
ttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgggcaccaaaaggattagcttctg |
15970460 |
T |
|
| Q |
176 |
gcttccctccattttcctcaaaagctgcccttaaacgacctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagg |
275 |
Q |
| |
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||||||| ||||| || |||||||| || || | | || || |||||||||||||||||||| ||||| | | ||||||||||||| ||| || || |
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| T |
15970459 |
gcttcccaccattctcttcaaaagcagctctaagtctcccaataagtgcatcaagactaccccacgcttggcgaagaggacatggacatgatgcaggtgg |
15970360 |
T |
|
| Q |
276 |
gtttggatgtccatagaatggacaaat |
302 |
Q |
| |
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|||||||||||||| || |||||||| |
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| T |
15970359 |
atttggatgtccataaaagggacaaat |
15970333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 33671942 - 33672168
Alignment:
| Q |
76 |
ttcttcttctcataactaatacctcttgctttggattgaagatcacgaacctcacgaaggtaaagtctaacagctctagcaccaaatggatttgtttctg |
175 |
Q |
| |
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||||| |||||||| || |||||||| ||||| |||||| ||| | ||| |||||||| | ||||||||||| | ||||||||| || || ||| | |
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| T |
33671942 |
ttctttttctcatagctgatacctctagctttcgattgagaatccctaacttcacgaagaaagagtctaacagcacgagcaccaaaagggttatcttcag |
33672041 |
T |
|
| Q |
176 |
gcttccctccattttcctcaaaagctgcccttaaacgacctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagg |
275 |
Q |
| |
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| ||||| |||||||| |||||||| || |||| | || |||| |||||||||||| ||||||||||||| || ||||| ||||| ||||| || || |
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| T |
33672042 |
gtttcccaccattttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgg |
33672141 |
T |
|
| Q |
276 |
gtttggatgtccatagaatggacaaat |
302 |
Q |
| |
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||||||||| ||| | ||||||||||| |
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| T |
33672142 |
gtttggatgaccaaaaaatggacaaat |
33672168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 304
Target Start/End: Complemental strand, 38980859 - 38980598
Alignment:
| Q |
43 |
tgttgtggttgttgttgtggtggacgtttccttttcttcttctcataactaatacctcttgctttggattgaagatcacgaacctcacgaaggtaaagtc |
142 |
Q |
| |
|
|||||| |||||||| |||||||||| || | |||||||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| || | |
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| T |
38980859 |
tgttgttgttgttgtggtggtggacgctttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcc |
38980760 |
T |
|
| Q |
143 |
taacagctctagcaccaaatggatttgtttctggcttccctccattttcctcaaaagctgcccttaaacgacctatcagtgcatcaagactaccccaagc |
242 |
Q |
| |
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| |||||||||||||||||||||||||||||||| || ||||||||||| ||||| || || | | ||||||||| ||||||||||| || ||||| || |
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| T |
38980759 |
tcacagctctagcaccaaatggatttgtttctggttttcctccattttcttcaaaggcggcacgaagacgacctatgagtgcatcaaggcttccccatgc |
38980660 |
T |
|
| Q |
243 |
ttgtcttaatggacatggacatggtgctggagggtttggatgtccatagaatggacaaattg |
304 |
Q |
| |
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||| || | |||||||||||||||||||| || |||||||| ||||| ||||||||||||| |
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|
| T |
38980659 |
ttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaattg |
38980598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 39556637 - 39556534
Alignment:
| Q |
187 |
ttttcctcaaaagctgcccttaaacgacctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagggtttggatgtc |
286 |
Q |
| |
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||||||||| |||| |||||||| | || || || ||||||||||| |||||||||||||| | |||||||| ||| |||||||| || | ||| |||| |
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| T |
39556637 |
ttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaaggtgctggtggctctggctgtc |
39556538 |
T |
|
| Q |
287 |
cata |
290 |
Q |
| |
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|||| |
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|
| T |
39556537 |
cata |
39556534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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