View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_7 (Length: 750)
Name: NF17203_low_7
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_7 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0210 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 608; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 11 - 750
Target Start/End: Complemental strand, 20654971 - 20654220
Alignment:
| Q |
11 |
cagagaggaagaaacggcgagctacggcgcataaagaggggaagatgacagttgaggaggttccgtacaagtgattgctagtctgggttctcttgtaaag |
110 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20654971 |
cagagaggaagaaatggcgagcgacggcgcaaaaagaggggaagatgacagttgaggaggttccgtacaagtgattgctagtctgggttctcttgtaaag |
20654872 |
T |
|
| Q |
111 |
tgcatcttccgtgcatc---------gtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaattgcagaacagagtcaaa |
201 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||| |
|
|
| T |
20654871 |
tgcatcttccgtgcatcttctcttgagtcaaattatcaaacacttcatacgcaacacaatgacattcaaattaggcaaaaaattgaaaaacatagtcaaa |
20654772 |
T |
|
| Q |
202 |
tttcatttagtaaaatcatcaaacacttcatactcaacacaataacaccttaagcaagcatcataattatcaaatttaataatctcacaatatcattgtg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20654771 |
tttcatttagtaaaatcatcaaacacttcatactcaacacaataacaccttaagcaagcatcataattatcaaatttaataatctcacaatatcattgtg |
20654672 |
T |
|
| Q |
302 |
gttcnnnnnnnnnngtagaacaaattcaaacaaaaccttagcagaattcaaagctcagtcaccatcaacaagcatcaatgaaggtgaatcacattaccaa |
401 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20654671 |
gttcaaaaaaaaaagtagaacaaattgaaacaaaaccttagcagaattcaaagctcagtccccatcaacaagcatcaatgaaggtgaatcacattaccaa |
20654572 |
T |
|
| Q |
402 |
gattagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaatattcattgaaaccacaaaccctaagatgagaattgaggg |
501 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
20654571 |
ggttagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaatattaactgaaaccacaaaccctaagatgagaattgaggg |
20654472 |
T |
|
| Q |
502 |
ataatcatcgcagagaaccctgtaagaatgtaattccctgattataattg---atgacaattatacatatacaattgtttctgattctaatatagaaact |
598 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20654471 |
ataatcatcgcagaaaaccctgtaagaatgtaattccctgattataattgatgatgagaattatacatatacaattgtttctgattctaatatagaaact |
20654372 |
T |
|
| Q |
599 |
aataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattga |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
20654371 |
aataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaataataatgtctaatgaatatacaataaacataattga |
20654272 |
T |
|
| Q |
699 |
taatgttcaggctgtcacggaaatcttggaacaatatcaagggaagaccagt |
750 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20654271 |
taatgtttaggctgtcacggaaatcttggaacaatatcaagggaagaccagt |
20654220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 11 - 746
Target Start/End: Original strand, 12037983 - 12038716
Alignment:
| Q |
11 |
cagagaggaagaaacggcgagctacggcgcataaagaggggaagatgacagttgaggaggttcc----gtacaagtgattgctagtctgggttctcttgt |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
12037983 |
cagagaggaagaaacggcgagggacggcgcacaaagaggggaagatgacagttgatgaggttccttccgtacgagtggttgctagtctgggttctcttgt |
12038082 |
T |
|
| Q |
107 |
aaagtgcatcttccgtgcatc---------gtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaattgcagaacagagt |
197 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12038083 |
aaagtgcatcttccttgcatcttctcttgagtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaattgcaaaacagagt |
12038182 |
T |
|
| Q |
198 |
caaatttcatttagtaaaatcatcaaacacttcatactcaacacaataacaccttaagcaagcatcataattatcaaatttaataatctcacaatatcat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038183 |
caaatttcatttagtaaaatcatcaaacacttcatactcaacacaataacaccttaagcaagtatcataattatcaaatttaataatctcacaatatcat |
12038282 |
T |
|
| Q |
298 |
tgtggttcnnnnnnnnnngtagaacaaattcaaacaaaaccttagcagaattcaaagctcagtcaccatcaacaagcatcaatgaaggtgaatcacatta |
397 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038283 |
tgtggttcaaaaaaaaaagtagaacaaattgaaacaaaaccttagcagaattcaaagctcagtcaccatcaacaagcatcaatgaaggtgaatcacatta |
12038382 |
T |
|
| Q |
398 |
ccaagattagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaatattcattgaaaccacaaaccctaagatgagaattg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12038383 |
ccaagattagaaaaccagatgaaatcttcgcaaat---------------atgaatggagaaaatattcattgaaaccacaaaccctaagatgcgaattg |
12038467 |
T |
|
| Q |
498 |
agggataatcatcgcagagaaccctgtaagaatgtaattccctgattataattgatgacaattatacatatacaattgtttctgattctaatatagaaac |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12038468 |
agggataatcatcgcagagaaccctgtaagaatgtaattccctgatcataattgatgagaattataaatatacaattgtttctgattctaatatagaaac |
12038567 |
T |
|
| Q |
598 |
taataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12038568 |
taataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaataataaggcctaatgaatatacaataaacataattg |
12038667 |
T |
|
| Q |
698 |
ataatgttcaggctgtcacggaaatcttggaacaatatcaagggaagac |
746 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038668 |
ataatgttgaggctgtcacggaaatcttggaacaatatcaagggaagac |
12038716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 129 - 508
Target Start/End: Complemental strand, 6346048 - 6345671
Alignment:
| Q |
129 |
tcaaattatcaaacacttcatacgcaacacaatg--acagtcaaattaggcaaaaaattgcagaacagagtcaaatttcatttagtaaaatcatcaaaca |
226 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
6346048 |
tcaaattatcaaacacttcataggcaacacaatgttaaagtcaaattaggcaaacaattgcgaaacagagtcaaattttattgagtaaaatcatcaaaca |
6345949 |
T |
|
| Q |
227 |
cttcatactcaacacaataacaccttaagcaa-gcatcataattatcaaatttaataatctcacaatatcattgtggttcnnnnnnnnnngtagaacaaa |
325 |
Q |
| |
|
||||| || ||| ||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||| |||| | | |||||||| |
|
|
| T |
6345948 |
cttcaaacccaatacaataacacc--aagaaaagcatcagaattatcaaatttaataatctcacaatatcactgtg--tataaaaaacaagaagaacaaa |
6345853 |
T |
|
| Q |
326 |
ttcaaacaaaaccttagcagaattcaaagctcagtcaccatcaacaagcatcaatgaaggtgaatcacattaccaagattagaaaaccagatgaaatctt |
425 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| ||| |||||||||| || |
|
|
| T |
6345852 |
ttgaaacaaaaccttagcaaaattcaaagctcagttaccatgaagaagcatcaatgaaggtgaatcacattaccgagattagtaaa-cagatgaaatttt |
6345754 |
T |
|
| Q |
426 |
cgcaaatcaccatgaacgcaatatgaatggagaaaatattcattgaaaccacaaaccctaagatgagaattgagggataatca |
508 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
6345753 |
cgcaaatcacgatgaacgcaatatgaatggagaaaatattctttgataccattaaccctaagatgagaattaggggataatca |
6345671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 571 - 699
Target Start/End: Original strand, 4185434 - 4185563
Alignment:
| Q |
571 |
aattgtttctgattctaatatagaaactaataa-tgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaataataatg |
669 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4185434 |
aattgtttctgattctgatatagaaactaataaatgcataatgaatatacaataatgtctaatcaatataattacatatttgacaagtaaaatagtaatg |
4185533 |
T |
|
| Q |
670 |
cctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
4185534 |
tctaatgaatatacaataaacataattgat |
4185563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 565 - 699
Target Start/End: Original strand, 4188580 - 4188715
Alignment:
| Q |
565 |
atatacaattgtttctgattctaatatagaaactaataa-tgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaata |
663 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4188580 |
atatacaattatttctgattctgatatagaaactaataaatgcctaatgaatatacaaaaatgtctaatcaatataattacatatttgacaagtaaaata |
4188679 |
T |
|
| Q |
664 |
ataatgcctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
||||| ||||| ||||| ||||||| |||| |||| |
|
|
| T |
4188680 |
gtaatgtctaataaatattcaataaatataactgat |
4188715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 616
Target Start/End: Original strand, 4185232 - 4185324
Alignment:
| Q |
528 |
aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaata |
616 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
4185232 |
aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaataaatgcataatgaata |
4185324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 624
Target Start/End: Complemental strand, 34014174 - 34014083
Alignment:
| Q |
537 |
ccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaataa |
624 |
Q |
| |
|
|||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| |||||| |
|
|
| T |
34014174 |
ccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcttaatcaatatacaataa |
34014083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 565 - 639
Target Start/End: Complemental strand, 34011226 - 34011151
Alignment:
| Q |
565 |
atatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaataatgcctattcaatata |
639 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||| ||| | |||||| |
|
|
| T |
34011226 |
atatataattgtttctgattctgatatagaaactaatgaatacctaatgaatatacaataatgtctaataaatata |
34011151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 707 - 747
Target Start/End: Complemental strand, 34013984 - 34013944
Alignment:
| Q |
707 |
aggctgtcacggaaatcttggaacaatatcaagggaagacc |
747 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34013984 |
aggctgtcacggaaatcttggaataatatcaagggaagacc |
34013944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 681
Target Start/End: Original strand, 20632771 - 20632814
Alignment:
| Q |
638 |
taattacatatttgacaagtcaaataataatgcctaatgaatat |
681 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
20632771 |
taattacatatttgacaagtcaactaataatgtctaatgaatat |
20632814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 707 - 747
Target Start/End: Original strand, 4185622 - 4185662
Alignment:
| Q |
707 |
aggctgtcacggaaatcttggaacaatatcaagggaagacc |
747 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4185622 |
aggctgtcacgaaaatcttggaataatatcaagggaagacc |
4185662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 699
Target Start/End: Complemental strand, 34014068 - 34014029
Alignment:
| Q |
660 |
aataataatgcctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34014068 |
aatagtaatgcctaatgaatatacaataaacataattgat |
34014029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 528 - 699
Target Start/End: Complemental strand, 3378894 - 3378719
Alignment:
| Q |
528 |
aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata |
623 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
3378894 |
aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata |
3378795 |
T |
|
| Q |
624 |
atgcctattcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||| | || |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3378794 |
atgcctaatcaatatacaataaacataattg---attctaatagtaatgcctaatgaatatacaataaacataattgat |
3378719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 528 - 699
Target Start/End: Original strand, 38618296 - 38618471
Alignment:
| Q |
528 |
aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata |
623 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
38618296 |
aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata |
38618395 |
T |
|
| Q |
624 |
atgcctattcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||| | || |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38618396 |
atgcctaatcaatatacaataaacataattg---attctaatagtaatgcctaatgaatatacaataaacataattgat |
38618471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 528 - 699
Target Start/End: Original strand, 38613894 - 38614069
Alignment:
| Q |
528 |
aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata |
623 |
Q |
| |
|
|||||||| ||| |||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
38613894 |
aatgtaatcccccgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata |
38613993 |
T |
|
| Q |
624 |
atgcctattcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
||||||| | ||||| ||| ||||| ||| | || |||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38613994 |
atgcctaatgaatatacaataaacataattg---attctaatagtaatgtctaatgaatatacaataaacataattgat |
38614069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 23241052 - 23240995
Alignment:
| Q |
128 |
gtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaatt |
185 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
23241052 |
gtcaaattatcaaacacttcatatgcaacacaatgacagtcaaattagacaaacaatt |
23240995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 700 - 747
Target Start/End: Complemental strand, 3378681 - 3378634
Alignment:
| Q |
700 |
aatgttcaggctgtcacggaaatcttggaacaatatcaagggaagacc |
747 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3378681 |
aatgttgagtctgtcacggaaatcttggaataatatcaagggaagacc |
3378634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 707 - 747
Target Start/End: Original strand, 38614114 - 38614154
Alignment:
| Q |
707 |
aggctgtcacggaaatcttggaacaatatcaagggaagacc |
747 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
38614114 |
aggctgtcacggaaatcttggaataatatcaaaggaagacc |
38614154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 23241070 - 23241019
Alignment:
| Q |
193 |
agagtcaaatttcatttagtaaaatcatcaaacacttcatactcaacacaat |
244 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
23241070 |
agagtcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat |
23241019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 528 - 639
Target Start/End: Original strand, 19340977 - 19341092
Alignment:
| Q |
528 |
aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata |
623 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19340977 |
aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata |
19341076 |
T |
|
| Q |
624 |
atgcctattcaatata |
639 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
19341077 |
atacctaatcaatata |
19341092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 528 - 699
Target Start/End: Original strand, 19336466 - 19336641
Alignment:
| Q |
528 |
aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata |
623 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| || ||||||| ||||| ||||| |
|
|
| T |
19336466 |
aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaaggcctaataaatatacaata |
19336565 |
T |
|
| Q |
624 |
atgcctattcaatata-attacatat--ttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat |
699 |
Q |
| |
|
|| |||| |||||||| | || |||| ||| | || |||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
19336566 |
atacctaatcaatatacaataaatataattg---attctaatagtaatgtctaatgaatatacaataaacataattgat |
19336641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 707 - 747
Target Start/End: Original strand, 19336686 - 19336726
Alignment:
| Q |
707 |
aggctgtcacggaaatcttggaacaatatcaagggaagacc |
747 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19336686 |
aggctgtcacggaaatcttggaataatatcaagggaagacc |
19336726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 536 - 695
Target Start/End: Complemental strand, 9857 - 9694
Alignment:
| Q |
536 |
tccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaataatgcctat |
631 |
Q |
| |
|
||||||||||| |||||||| |||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
9857 |
tccctgattattattgatgagaattgtgataggtatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaataatgcctaa |
9758 |
T |
|
| Q |
632 |
tcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataat |
695 |
Q |
| |
|
||||||| ||| ||||| ||| | || |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
9757 |
tcaatatacaataaacataattg---attctaatagtaatgcctaatgaatatacaataaacataat |
9694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 681
Target Start/End: Complemental strand, 21541957 - 21541914
Alignment:
| Q |
638 |
taattacatatttgacaagtcaaataataatgcctaatgaatat |
681 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21541957 |
taattacatatttgacaagtcaactaataatgtctaatgaatat |
21541914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University