View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_70 (Length: 314)
Name: NF17203_low_70
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 39091873 - 39091594
Alignment:
| Q |
9 |
agcagagaagttgtgtcacatgaacatgatgtgaatcccatatgtttattaccattatcaatcttacaattacattaacagaagaaatataaactaatgt |
108 |
Q |
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| T |
39091873 |
agcagagaagttgtgtcacatgaacatgatgtgaatcccatatgtttattaccattatcaatcttacaattacattaacagaagaaatataaactaatgt |
39091774 |
T |
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| Q |
109 |
cctacattaatcgtaacatagacnnnnnnnngtacacagtacattatttgattgtcattgatgaatcaatataatatgttctgtctttggatatgaccaa |
208 |
Q |
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| T |
39091773 |
cctacattaatcgtaacatagacaaaaaaaagtacacagtacattatttgattgtcattgatgaatcaatataatatgttctgtctttggatatgaccaa |
39091674 |
T |
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| Q |
209 |
accccacacaatcagtggaaacnnnnnnnnnnnnnnnnnnngtaatccctggcatactattgatctattatacacttaccttagtagt |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39091673 |
accccacacaatcagtggaaac--------tatatatatatgtaatccctggcatactattgatctattatacacttaccttagtagt |
39091594 |
T |
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