View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_72 (Length: 311)
Name: NF17203_low_72
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 48055270 - 48054983
Alignment:
| Q |
7 |
ctaaatacagtcctgtgacttctcatgataacgagaccactggatgaatcggttgaccactggatgaagctaccatctcaaaagctaagatggtattcta |
106 |
Q |
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| T |
48055270 |
ctaaatacagtcctgtgacttctcatgataacgagaccactggatgaatcggttgaccactggatgaagctaccatctcaaaagctaagatggtattcta |
48055171 |
T |
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| Q |
107 |
agtaagacatcaaagagtcaccaccatggtatgacataagtggtagatacttgagtcatttaatcatttagtaagaggtttgatctcagattgatgcgta |
206 |
Q |
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| T |
48055170 |
agtaagacatcaaagagtcaccaccatggtatgacataagtggtagatacttgagtcatttaatcatttagtaagaggtttgatctcagatcgatgcgta |
48055071 |
T |
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| Q |
207 |
taaaaacataacttataagattaagataaactatgacccacaatagtctttcatgaccaactcttttttcagccaacacccatacactattcat |
300 |
Q |
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| T |
48055070 |
taaaaacataacttata------agataaactatgacccacaatagtctttcatgaccaacttgtttttcagccaacacccatacactattcat |
48054983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 48041735 - 48041675
Alignment:
| Q |
231 |
gataaactatgacccacaatagtctttcatgaccaactcttttttcagccaacacccatac |
291 |
Q |
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| T |
48041735 |
gataaactatgactcacaatagtcttatatgacccacttgtttttcagctaacacccatac |
48041675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 48036538 - 48036500
Alignment:
| Q |
16 |
gtcctgtgacttctcatgataacgagaccactggatgaa |
54 |
Q |
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| T |
48036538 |
gtcctgtgtcttctcatgataatgagaccactggatgaa |
48036500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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