View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_75 (Length: 299)
Name: NF17203_low_75
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_75 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 65 - 285
Target Start/End: Original strand, 54395375 - 54395595
Alignment:
| Q |
65 |
ttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaaactcatccacttccgccatttgattcccctccaaccac |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54395375 |
ttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaaactcatccacttccgccatttgattcccctccaaccac |
54395474 |
T |
|
| Q |
165 |
tgtatagcatcttccacagccttctcaatcttctccttatcatcatgactcaacttcccaccaatcttctcatcctttattgtattcctcatattataag |
264 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54395475 |
tgtattgcatcttccacagccttctcaatcttctccttatcttcatgactcaacttcccaccaatcttctcatccttaattgtattcctcatattataag |
54395574 |
T |
|
| Q |
265 |
cataattctcaagtgaattct |
285 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
54395575 |
cataattctcaattgaattct |
54395595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University