View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_78 (Length: 295)
Name: NF17203_low_78
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_78 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 28657988 - 28657705
Alignment:
| Q |
12 |
gaacgcttcaaatttctttaggcttacaagaattttattatggtgcagagaagttgtttgtgacactttcaaaatggttgatattctttagacttttact |
111 |
Q |
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| T |
28657988 |
gaacgcttcaaatttctttacgcttacaagaattttattatggtgcagagaagtggtttgtgacactttcaaaatggttgatattctttagacttttact |
28657889 |
T |
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| Q |
112 |
aagatgaggtgtttgtatgaattgagagatggtatgcgtgagagtgtgtattcagggaatcataatatcagactactatagatcccattttttatagctt |
211 |
Q |
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| T |
28657888 |
aagatgaggtgtttctatgaattgagagatggtatgcgtgagagtttgtgtttagggaatcataatatcagactactatagatcccattttttatagctt |
28657789 |
T |
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| Q |
212 |
ttgacaagtatcatttcttcaagcaacacacctattaaacatcagctctgaattgtacactctttttgccgtcttatgctatac |
295 |
Q |
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| T |
28657788 |
ttgacaagtatcatttcttcaagcaacacacctattaaacatcagctctgaattgtacactctttttgccgttttaagctatac |
28657705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 28658330 - 28658445
Alignment:
| Q |
18 |
ttcaaatttctttaggcttacaagaattttattatggtgcagagaagttg-tttgtgacactttcaaaatggttgatattctttagacttttactaagat |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||| ||| |
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| T |
28658330 |
ttcaaatttctttaggcttacaagaatttgtttatggtgcagagaagttgttttgtgacactttcaaaatgatgaatattctttagacttgcactacgat |
28658429 |
T |
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| Q |
117 |
gaggtgtttgtatgaa |
132 |
Q |
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| T |
28658430 |
gaggtgtttgtatgaa |
28658445 |
T |
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