View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_80 (Length: 289)
Name: NF17203_low_80
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 274
Target Start/End: Original strand, 44630205 - 44630435
Alignment:
| Q |
43 |
taaagagggtaatctactatttactcataatcccaaatgnnnnnnnnnnaatcaaccaatcaaaagacggaatccaacnnnnnnn-ttgatgtattttta |
141 |
Q |
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| T |
44630205 |
taaagagggtaatctactatttactcataatcccaaatgtttttttt--aatcaaccaatcaaaagacggaatctaacaaaaaaaattgatgtattttta |
44630302 |
T |
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| Q |
142 |
tattcgttaatcttatccatccaataatctttccttttcttgacgtattttctattgcttatactttgtatttattccttttccactgttcggctgatga |
241 |
Q |
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| T |
44630303 |
tattggttaatcttatccatccaataatctttccttttcttgacgtattttctattgcttatactttgtatatattccttttccactgttcggctgatga |
44630402 |
T |
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| Q |
242 |
tttaatcaaagagattatgtagcttgtagttct |
274 |
Q |
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| T |
44630403 |
tttaatcaaagagactctgtagcttgtagttct |
44630435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 44680622 - 44680702
Alignment:
| Q |
187 |
tattttctattgcttatactttgtatttattcc-ttttccactgttcggctgatgatttaatcaaagagattatgtagctt |
266 |
Q |
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| T |
44680622 |
tattttcttatgcttagactttgtatatattacattttccactgtccggctgatgaattaatcaaagagaatctgtagctt |
44680702 |
T |
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