View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_82 (Length: 286)
Name: NF17203_low_82
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_82 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 37749510 - 37749758
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaacaagaggaagaaaattgttgtcgataagctaggaaagtagacaaccaatgtgtttgtgaacttctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37749510 |
actaactaacattagaatatgaattatacttcaacaagaggaagaaaattgttgtcgataagctaggaaagtggacaaccaatgtgtttgtgaacttctt |
37749609 |
T |
|
| Q |
117 |
gttcgtttgccaccattccttgttaggcctttacatctctacacactcaacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgat |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37749610 |
gttcatttgccaccattccttgttaggcctttacatctctacacactcaacattggtgaagactgcgagatcactt------------gtccaatatgat |
37749697 |
T |
|
| Q |
217 |
tcacaaacttgcatcaattatgatgcaggttatacatttattaattattattatcctatgc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37749698 |
tcacaaacttgcatcaattatgatgcaggttatacatttattaattattattatcctatgc |
37749758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 37734070 - 37734271
Alignment:
| Q |
58 |
aagaaaattgttgtcgataagctaggaaagtagacaaccaatgtgtttgtgaacttcttgttcgtttgccaccattccttgttaggcctttacatctcta |
157 |
Q |
| |
|
||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37734070 |
aagaaaattgttgccgatgggctagggaagtggacaaccaatgtgtttgtgaacttcttgttcgtttgccaccattccttgttaggcctttacatctcta |
37734169 |
T |
|
| Q |
158 |
cacactcaacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattcacaaacttgcatcaattatgatgcaggttatacatttat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
37734170 |
cacactcaacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattctcaaacttgcattgattatgatgcaggttatacagttat |
37734269 |
T |
|
| Q |
258 |
ta |
259 |
Q |
| |
|
|| |
|
|
| T |
37734270 |
ta |
37734271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 37747954 - 37747989
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37747954 |
actaactaacatcagaatatgaattatacttcaaca |
37747989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 43039358 - 43039320
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaacaaga |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43039358 |
actaactaacattagaatatgaattatacttcaacaaga |
43039320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 14196704 - 14196669
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14196704 |
actaactaacattagaatatgaattatacttcaaca |
14196669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 43041213 - 43041178
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43041213 |
actaactaacattagaatatgaattatacttcaaca |
43041178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 53611251 - 53611216
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53611251 |
actaactaacattagaatatgaattatacttcaaca |
53611216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 28027976 - 28027941
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
28027976 |
actaactaacattagaatatgaattatacttcaaca |
28027941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 31477977 - 31477942
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31477977 |
actaactaacattagaatatgaattatacttcaaca |
31477942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 3584505 - 3584473
Alignment:
| Q |
20 |
aactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3584505 |
aactaacattagaatatgaattatacttcaaca |
3584473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 38206860 - 38206825
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38206860 |
actaactaacattagaatattaattatacttcaaca |
38206825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 496764 - 496799
Alignment:
| Q |
17 |
actaactaacattagaatatgaattatacttcaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
496764 |
actaactaacattagaatatgaataatacttcaaca |
496799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 31798810 - 31798778
Alignment:
| Q |
21 |
actaacattagaatatgaattatacttcaacaa |
53 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
31798810 |
actaatattagaatatgaattatacttcaacaa |
31798778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University