View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_9 (Length: 671)

Name: NF17203_low_9
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_9
NF17203_low_9
[»] chr4 (1 HSPs)
chr4 (19-661)||(37595306-37595963)


Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 661
Target Start/End: Complemental strand, 37595963 - 37595306
Alignment:
Q  19 tgttagagagaagaatcaaagttatcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37595963 tgttagagagaagaatcaaagttatcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttc 37595864  T
Q  119 tactacactaggtcaaatatagagcaaatttcannnnnnncatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttt 218  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37595863 tactacactaggtcaaatatagagcaaatttcatttttttcatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttt 37595764  T
Q  219 tgatgttgtagagacttcaaaaccttttaggt----------------aaaccatgatataatatatgtaggttgaattagtgtcttctcttannnnnnn 302  Q
    ||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||           
T  37595763 tgatgttgtagagacttcaaaaccttttaggttgtcgaccacaatttaaaaccatgatataatatatgtaggttgaattagtgtcttctcttatcttttt 37595664  T
Q  303 nnnnnnnncagtacacatatataatagaaatagagtcattattctatgtatctagtgtagttcaaaattttcaatttaatttattgaaacaataccttct 402  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37595663 tctttttt-agtacacatatataatagaaatagagtcattattctatgtatctagtgtagttcaaaattttcaatttaatttattgaaacaataccttct 37595565  T
Q  403 tttagtgatttatttcatttatcttagaacaaaaaatcaatcaaaagggtatgtgtcaaaattaatggcatagccataaagaaactgtgtacttttttgc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37595564 tttagtgatttatttcatttatcttagaacaaaaaatcaatcaaaagggtatgtgtcaaaattaatggcatagccataaagaaactgtgtacttttttgc 37595465  T
Q  503 tacatttgttacgaggttaacacaaattcactagactattccattttctatttttgtgtgtttcatattcaattttctatgtaagaggcacaagtgccac 602  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37595464 tacatttgttatgaggttaacacaaattcactagactattccattttctatttttgtgtgtttcatattcaattttctatgtaagaggcacaagtgccac 37595365  T
Q  603 atcaattagtgtcatgtggatctgcaaggaaacaaattatctccattatctgtgctcct 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37595364 atcaattagtgtcatgtggatctgcaaggaaacaaattatctccattatttgtgctcct 37595306  T

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