View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_92 (Length: 257)
Name: NF17203_low_92
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 23003680 - 23003497
Alignment:
| Q |
59 |
tgagatccgagggagtaacgatttagagttagagtttaagagaaaagacgaaaatgataaactaattttatttttaatactgtatataaagcttcaaatg |
158 |
Q |
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| T |
23003680 |
tgagatcggagggagtaactattcagagttagagtttaagagaaaaaacgaaaatgataaactaatttgatttttatttctgtatataaagcttcaaatg |
23003581 |
T |
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| Q |
159 |
aggttcagtacaatttatatttccatgccaataatgaagacttcaattaaatctggagaaaaacaagaaaggtctaaagaagca |
242 |
Q |
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| T |
23003580 |
aggttcagtacaatttatatttccatgccaataatgaagacttcaattaaatctggagaaaaacaagaaaggtctaaagaagca |
23003497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 23003706 - 23003678
Alignment:
| Q |
8 |
ggtgaaggtgaagtttctagattgaatga |
36 |
Q |
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| T |
23003706 |
ggtgaaggtgaagtttctagattgaatga |
23003678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 43296001 - 43296034
Alignment:
| Q |
43 |
aaaagttgcttacatttgagatccgagggagtaa |
76 |
Q |
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| T |
43296001 |
aaaagttgcttacatttgagatcggagggagtaa |
43296034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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