View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_93 (Length: 256)
Name: NF17203_low_93
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 33270880 - 33271015
Alignment:
| Q |
105 |
aacagtttgactgagtgatattggtgactattttcaggtgtccaactggtttcaagtgtggaatcaactaccagcctccaacagtggtaccgggaggtga |
204 |
Q |
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| T |
33270880 |
aacagtttgactgagtgatattggtgactattttcaggtgtccaactggtttcaagtgtggaatcaactaccagcctccaacagtggtaccgggaggcga |
33270979 |
T |
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| Q |
205 |
tcttgcgaaggtgatgcgtgcggtttgtatgataag |
240 |
Q |
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| T |
33270980 |
tcttgcgaaggtgatgcgtgcggtttgtatgataag |
33271015 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 10031364 - 10031264
Alignment:
| Q |
140 |
aggtgtccaactggtttcaagtgtggaatcaactaccagcctccaacagtggtaccgggaggtgatcttgcgaaggtgatgcgtgcggtttgtatgataa |
239 |
Q |
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| T |
10031364 |
aggtgtccaactggattcaagtgtggcataaacttccaaccaccaacagttgtaccaggaggcgatctagccgaggtgagacgtgccgtttgtatgataa |
10031265 |
T |
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| Q |
240 |
g |
240 |
Q |
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| T |
10031264 |
g |
10031264 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 40377187 - 40377111
Alignment:
| Q |
141 |
ggtgtccaactggtttcaagtgtggaatcaactaccagcctccaacagtggtaccgggaggtgatcttgcgaaggtg |
217 |
Q |
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| T |
40377187 |
ggtgcccaactggattcaagtgtggaatcaattatcagcctccaactgttgttccagggggtgatcttgccaaggtg |
40377111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 51751754 - 51751678
Alignment:
| Q |
141 |
ggtgtccaactggtttcaagtgtggaatcaactaccagcctccaacagtggtaccgggaggtgatcttgcgaaggtg |
217 |
Q |
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| T |
51751754 |
ggtgtccaactgggttcaagtgtggtatcaattaccagcctcctactgttgttcctggtggtgatcttgccaaggtg |
51751678 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 35669100 - 35669023
Alignment:
| Q |
139 |
caggtgtccaactggtttcaagtgtggaatcaactaccagcctccaacagtggtaccgggaggtgatcttgcgaaggt |
216 |
Q |
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| T |
35669100 |
caggtgcccaactggtttcaaatgtggtatcaactatcagcctccttcagttgtgcctggaggtgaccttgctaaggt |
35669023 |
T |
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