View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_98 (Length: 255)
Name: NF17203_low_98
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 51529772 - 51529519
Alignment:
| Q |
1 |
cttttaccattatatcatagacaacagtagcataagagcaagcaagtgcaatgtttcccaaagcagtcaaaactttccaaattttgtcatcttctgacaa |
100 |
Q |
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| T |
51529772 |
cttttaccattatatcatagacaacagtagcataagagcaagcaagtgcaatgtttcccaaagcagtcaaaactttccaaattttgtcatcttctgacaa |
51529673 |
T |
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| Q |
101 |
tcttcctggtcctactttggttccaaacaaactggttgtttctcctttccctgttcacagccaaaaatgccttagtaatgttggtcacatcatttttcag |
200 |
Q |
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| T |
51529672 |
---tcctggtcctactttggttccaaacaaactggttgtttctcctttccctgttcacagccaaaaatgccttagtaatgttggtcacatcatttttcag |
51529576 |
T |
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| Q |
201 |
--------------tgacaagcttttggtggaatatacagtatgttgttaatatttt |
243 |
Q |
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| T |
51529575 |
ttttttgtagtcactgacaagcttttggtggaatatacagtatgttgttaatatttt |
51529519 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12030148 - 12030206
Alignment:
| Q |
2 |
ttttaccattatatcatagacaacagtagcataagagcaagcaagtgcaatgtttccca |
60 |
Q |
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| T |
12030148 |
ttttaccattatgtcgtaaataacagtagcataagtgcaagcaagtgctatgtttccca |
12030206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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