View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17204_high_2 (Length: 251)

Name: NF17204_high_2
Description: NF17204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17204_high_2
NF17204_high_2
[»] chr7 (8 HSPs)
chr7 (47-239)||(21103501-21103694)
chr7 (56-239)||(6621268-6621452)
chr7 (48-239)||(15846813-15847006)
chr7 (48-239)||(15856023-15856216)
chr7 (56-239)||(36307973-36308150)
chr7 (48-164)||(11911422-11911540)
chr7 (62-114)||(44094847-44094899)
chr7 (154-190)||(21824398-21824434)
[»] chr6 (2 HSPs)
chr6 (48-239)||(33132180-33132373)
chr6 (56-239)||(17812214-17812398)
[»] chr2 (3 HSPs)
chr2 (48-239)||(17102673-17102866)
chr2 (48-239)||(32019407-32019600)
chr2 (154-193)||(20471194-20471233)
[»] chr1 (3 HSPs)
chr1 (48-239)||(17431135-17431328)
chr1 (61-239)||(44002218-44002397)
chr1 (63-239)||(3322075-3322252)
[»] chr8 (2 HSPs)
chr8 (56-239)||(14848327-14848511)
chr8 (154-190)||(3989543-3989579)
[»] chr5 (1 HSPs)
chr5 (48-239)||(11123569-11123762)
[»] chr4 (2 HSPs)
chr4 (53-239)||(12601765-12601962)
chr4 (48-178)||(16549377-16549509)
[»] chr3 (4 HSPs)
chr3 (49-239)||(35327008-35327198)
chr3 (56-110)||(32922725-32922779)
chr3 (141-220)||(10980960-10981039)
chr3 (154-190)||(2439511-2439547)
[»] scaffold1689 (1 HSPs)
scaffold1689 (154-190)||(934-970)
[»] scaffold0114 (1 HSPs)
scaffold0114 (154-190)||(11542-11578)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 21103501 - 21103694
Alignment:
Q  47 ggacagaaaataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtga-tgccct 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||   ||||    
T  21103501 ggacagaaaataactatctcatttcattaataagaacatcttgaatacaatcaggtaatacagtgaaaaggtggatactagcatataatgtgaccaccct 21103600  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    || || ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  21103601 agtaaatctatgagcaacctcatttgcttgtctcctaataaaatctactcttgattttgtgaaaaaggattagaaagtagtcctagattctctg 21103694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 6621268 - 6621452
Alignment:
Q  56 ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccctagcaagtct 154  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   ||||||||||||||    
T  6621268 ataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccctagcaagtct 6621367  T
Q  155 atgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||    
T  6621368 atgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaggtagtcatacattctctg 6621452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 15846813 - 15847006
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||| ||||| |||||||| |||||  || |||||||| ||| ||||||   |||||    
T  15846813 gacagaaagataattatctcatttcattaataaggacatcttgaatataatcaggtaatacagtgaaatagtggatactagtataaaatgtggccgccct 15846912  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  15846913 agcaagtctatgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaggtagtcctacattctctg 15847006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 15856023 - 15856216
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||| ||||| |||||||| |||||  || |||||||| ||| ||||||   |||||    
T  15856023 gacagaaagataattatctcatttcattaataaggacatcttgaatataatcaggtaatacagtgaaatagtggatactagtataaaatgtggccgccct 15856122  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  15856123 agcaagtctatgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaggtagtcctacattctctg 15856216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 36308150 - 36307973
Alignment:
Q  56 ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccctagcaagtct 154  Q
    |||| |||||||||||||||||||| ||||||||||||||||||  ||||| |||      || |||||||||||| ||||||   ||||||||||||||    
T  36308150 ataattatctcatttcattaataaggacatcttgaatacaatcagataataaaata-----gtggatactagcataaaatgtggccgccctagcaagtct 36308056  T
Q  155 atgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    |||||||||||||||||||||||| |||||||||||||  |||  |||||||||||| |||||||| ||||||||||||||||||    
T  36308055 atgagcaacctcatttgcttgtctcctaataaactctatcctt--gtttgtgaaaaaagatgagaatgtagtcctacattctctg 36307973  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 11911422 - 11911540
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgt-gatgccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||| | |||||  || |||||||||||| ||||| |  |||||    
T  11911422 gacagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatagagtgaaatagtggatactagcataaaatgtggccgccct 11911521  T
Q  146 agcaagtctatgagcaacc 164  Q
    |||||||||||||||||||    
T  11911522 agcaagtctatgagcaacc 11911540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 44094847 - 44094899
Alignment:
Q  62 atctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaa 114  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| |||||    
T  44094847 atctcatttcattaataaggacatcttgaatgcaatcatgtaatacagtgaaa 44094899  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 21824434 - 21824398
Alignment:
Q  154 tatgagcaacctcatttgcttgtcttctaataaactc 190  Q
    |||||||||||||||||||||| || |||||||||||    
T  21824434 tatgagcaacctcatttgcttgcctcctaataaactc 21824398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 33132180 - 33132373
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   |||||    
T  33132180 gacagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccct 33132279  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  33132280 agcaagtctatgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaagtagtcctacattctctg 33132373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 17812398 - 17812214
Alignment:
Q  56 ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccctagcaagtct 154  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   ||||||||||||||    
T  17812398 ataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccctagcaagtct 17812299  T
Q  155 atgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  17812298 atgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaggtagtcctaaattctctg 17812214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 17102673 - 17102866
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   |||||    
T  17102673 gacagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccct 17102772  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  17102773 agcaagtctatgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaggtagtcctacattctctg 17102866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 32019407 - 32019600
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| | |||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   |||||    
T  32019407 gacagaaagataattatctcatttcattaataaggatatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccct 32019506  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32019507 agcaagtctatgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaagtagtcctacattctctg 32019600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 20471233 - 20471194
Alignment:
Q  154 tatgagcaacctcatttgcttgtcttctaataaactctac 193  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  20471233 tatgagcaacctcatttgcttgcctcctaataaactctac 20471194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 239
Target Start/End: Complemental strand, 17431328 - 17431135
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||| | |||||  || |||||||||||| ||||||   |||||    
T  17431328 gacagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatatagtgaaatagtggatactagcataaaatgtggccgccct 17431229  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  17431228 agcaagtctatgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaagtagtcctacattctctg 17431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 44002397 - 44002218
Alignment:
Q  61 tatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccctagcaagtctatgag 159  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   |||||||||||||||||||    
T  44002397 tatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccctagcaagtctatgag 44002298  T
Q  160 caacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||    
T  44002297 caacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaggtagtcatacattctctg 44002218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 3322252 - 3322075
Alignment:
Q  63 tctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccctagcaagtctatgagca 161  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| | |||  || |||| ||||||| ||||||   |||||||||||||||||||||    
T  3322252 tctcatttcattaataaggacatcttgaatacaatcaggtaatacagtaaaatagtggatattagcataaaatgtggccgccctagcaagtctatgagca 3322153  T
Q  162 acctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    | ||||||| ||||||| ||||||||||||||  |||||||||||||||| |||||||| ||||||||||||||||||    
T  3322152 atctcattttcttgtctcctaataaactctacctttgagtttgtgaaaaaagatgagaaggtagtcctacattctctg 3322075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 14848327 - 14848511
Alignment:
Q  56 ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgt-gatgccctagcaagtct 154  Q
    |||| |||||||||||||||||||| | |||||||||||||||| |||||||| |||||  || |||||||||||| ||||| |  ||||||||||||||    
T  14848327 ataattatctcatttcattaataaggatatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtagccgccctagcaagtct 14848426  T
Q  155 atgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  14848427 atgagcaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaagtagtcctacattctctg 14848511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 3989579 - 3989543
Alignment:
Q  154 tatgagcaacctcatttgcttgtcttctaataaactc 190  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  3989579 tatgggcaacctcatttgcttgtcgtctaataaactc 3989543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 239
Target Start/End: Complemental strand, 11123762 - 11123569
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||   |||||    
T  11123762 gacagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgccct 11123663  T
Q  146 agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  11123662 agcaagactatgaacaacctcatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaagatgagaaagtagtcctacattctctg 11123569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 12601765 - 12601962
Alignment:
Q  53 aaaataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggta----------gatactagcatataatgtgatgc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           |||||||||||||||||||        
T  12601765 aaaataactatctcatttcattaataagaacatcttgaatacaatcaggtaatacaatgaaaaggtgtgaaaaggtggatactagcatataatgtggcca 12601864  T
Q  143 cct-agcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||| |  ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  12601865 ccttatgaagtctatgagcaaccttatttgcttgtctcctaataaactctacccttgagtttgtgaaaaaggatgcgaaggtagtcctacattctctg 12601962  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 16549509 - 16549377
Alignment:
Q  48 gacagaaa-ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgatg-ccct 145  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||  || |||||||||||| ||||||    ||||    
T  16549509 gacagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccaccct 16549410  T
Q  146 agcaagtctatgagcaacctcatttgcttgtct 178  Q
    |||||||||||||||||||||||||||||||||    
T  16549409 agcaagtctatgagcaacctcatttgcttgtct 16549377  T

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Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 35327198 - 35327008
Alignment:
Q  49 acagaaaataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaatgaaaaggtagatactagcatataatgtgat-gccctag 147  Q
    |||||||||||||||| ||||| |||||||| |||||||| |||| ||||| |||||||||||||  |||  ||||||||||| |||  |   |||||||    
T  35327198 acagaaaataactatcccatttaattaataaaaacatcttaaatataatcaggtaatacaatgaaccggtgaatactagcataaaatccggccgccctag 35327099  T
Q  148 caagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaaagtagtcctacattctctg 239  Q
    ||||||||||||||||||| || |||||| | |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  35327098 caagtctatgagcaacctcgttagcttgtttcctaataaactctac-cttgagtttgtgaaaaatgatgagaaagtattcctacattctctg 35327008  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 32922779 - 32922725
Alignment:
Q  56 ataactatctcatttcattaataagaacatcttgaatacaatcaagtaatacaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32922779 ataactatctcatttcattaataagaacatcttgaatacaatcaggtaatacaat 32922725  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 10980960 - 10981039
Alignment:
Q  141 gccctagcaagtctatgagcaacctcatttgcttgtcttctaataaactctactcttgagtttgtgaaaaaggatgagaa 220  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||||| ||    |||||||||||||| ||||||||    
T  10980960 gccctagcaagactatgagcaaccttatttgtttgtctcctaataaactcaacctgcgagtttgtgaaaaaagatgagaa 10981039  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 2439547 - 2439511
Alignment:
Q  154 tatgagcaacctcatttgcttgtcttctaataaactc 190  Q
    |||||||||||||||||||||| || |||||||||||    
T  2439547 tatgagcaacctcatttgcttgcctcctaataaactc 2439511  T

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Target: scaffold1689 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 970 - 934
Alignment:
Q  154 tatgagcaacctcatttgcttgtcttctaataaactc 190  Q
    |||||||||||||||||||||| || |||||||||||    
T  970 tatgagcaacctcatttgcttgcctcctaataaactc 934  T

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Target: scaffold0114 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 11542 - 11578
Alignment:
Q  154 tatgagcaacctcatttgcttgtcttctaataaactc 190  Q
    |||||||||||||||||||||| || |||||||||||    
T  11542 tatgagcaacctcatttgcttgcctcctaataaactc 11578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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