View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_high_14 (Length: 251)
Name: NF17205_high_14
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_high_14 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 25323823 - 25323577
Alignment:
| Q |
4 |
cggtgttgtgaaaggttgagggtgcagcaaatcaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggtattgttctctgctt |
103 |
Q |
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| T |
25323823 |
cggtgttgtgaaaggttgagggtgcagcaaataaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggtattgttatctgctc |
25323724 |
T |
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| Q |
104 |
acatatacaaagcatcttaattttcaataaagaattttttatactacttttcattcaaataaaaattgaatatgtaaaataatttttcagggaataagta |
203 |
Q |
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| T |
25323723 |
acatatacaaagcatcttaattttcaataaagaat-ttttatactacttttcattcaaacaaaaattgaatatataaaataatttttcagggaataagta |
25323625 |
T |
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| Q |
204 |
ccaaggtaatggagatattgcatgcgaccaatatcacaaatataaggt |
251 |
Q |
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| T |
25323624 |
ccaaagtaatggagatattgcatgcgaccaatatcacaaatataaggt |
25323577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 25329981 - 25329899
Alignment:
| Q |
12 |
tgaaaggttgagggtgcagcaaatcaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggtattgt |
94 |
Q |
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| T |
25329981 |
tgaaagtttgaaggtgcagcaaatgaagatggcaggaaaccaagcatatgggatacctttgcccatggtggaaatggtattgt |
25329899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 9988872 - 9988952
Alignment:
| Q |
14 |
aaaggttgagggtgcagcaaatcaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggtattgt |
94 |
Q |
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| T |
9988872 |
aaagtttgaaggtgcatcaaatgaagacggtaggaaaccaagcatatgggatacctttgcccgtggtggaaatggtattgt |
9988952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 25329838 - 25329774
Alignment:
| Q |
187 |
ttttcagggaataagtaccaaggtaatggagatattgcatgcgaccaatatcacaaatataaggt |
251 |
Q |
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| T |
25329838 |
ttttcagcgaatatgtacgagggtgatggagatattgcatgcgatggatatcacaaatacaaggt |
25329774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 14331905 - 14331985
Alignment:
| Q |
14 |
aaaggttgagggtgcagcaaatcaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggtattgt |
94 |
Q |
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| T |
14331905 |
aaagtttgaaggtgcagcaaatgaagatggtaggaaaccaagcatatgggatacctttgcccatggtggaaatggtattgt |
14331985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 5220955 - 5220877
Alignment:
| Q |
12 |
tgaaaggttgagggtgcagcaaatcaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggta |
90 |
Q |
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| T |
5220955 |
tgaaaggtagaaggtgcagcaaatgaagatggcaggaaggcaagcatatgggatacctttgcacatgctggcaatggta |
5220877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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