View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_high_15 (Length: 250)
Name: NF17205_high_15
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 31260287 - 31260059
Alignment:
| Q |
22 |
acacacactttgtaaggtctttcagaattataaaatggattaggttaatgtgggatatacttagaaaattaggcctataaaacaatattgaattagattt |
121 |
Q |
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| T |
31260287 |
acacacactttataaggtctttcagagttataaagtggattaggttaatgtgagatatacttaggaaagtaggcctataaaacaatattgagttagattt |
31260188 |
T |
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| Q |
122 |
tcaacctacggatttctactaaacaatgaagtattactagttatccttccttaaaccaaaacaaaatgtgtattaagtagaattatttatctttcatttt |
221 |
Q |
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| T |
31260187 |
tcaacctacggattcctactaaacaatgaagtattactagttatccttccttaaaccaaaacaaaatgtgtattaagtagaattatttatctttcatttt |
31260088 |
T |
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| Q |
222 |
acgagatagatgcaatgaagtatcaccat |
250 |
Q |
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| T |
31260087 |
acgagatagatacaatgaagtatcaccat |
31260059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 5740976 - 5740907
Alignment:
| Q |
109 |
ttgaattagattttcaacctacggatttctactaaacaatgaagtattactagttatccttccttaaacc |
178 |
Q |
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| T |
5740976 |
ttgagttagattttcaacctacggattcctactaaatattgaagtattaccaatcttccttccttaaacc |
5740907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 4839382 - 4839534
Alignment:
| Q |
61 |
ttaggttaatgtgggatatacttagaaaattaggcctataaaacaatattgaa-ttagattttcaacctacggatttctactaaacaatgaagtattact |
159 |
Q |
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| T |
4839382 |
ttaggttaaggtgagatata-ttagaaaagtaggctaacaaaacaac-ttgaagttagattatcaacctgaggtttcctactaaacattgaagtactact |
4839479 |
T |
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| Q |
160 |
agttatccttccttaaaccaaaacaaaatgtgtattaagtagaattatttatcttt |
215 |
Q |
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| T |
4839480 |
aacattccttccttaaaccaaa-caagatgggtattaaatagaactatttatcttt |
4839534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 20337934 - 20337746
Alignment:
| Q |
24 |
acacactttgtaaggtctttcagaattataaaatggattaggttaatgtgggatatacttagaaaattaggcctataaaacaatattgaattagattttc |
123 |
Q |
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| T |
20337934 |
acacactttg--aggtctttcaaggttataacatgacttaagttaaggtgggatatatttgagaaagtaggccggtaaaacaacttggagttagattttc |
20337837 |
T |
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| Q |
124 |
aacctacggatttctactaaacaatgaagtattactagttatccttccttaaaccaaaacaaaatgtgtattaagtagaattatttatcttt |
215 |
Q |
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| T |
20337836 |
agcctatagatttctactaaacattgaagtattaataacattcatttcttaaaccaaaacaagatgggtactaacta-aattttttatcttt |
20337746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 17971030 - 17971139
Alignment:
| Q |
114 |
ttagattttcaacctacggatttctactaaacaatgaagtattactagt--tatccttccttaaaccaaaacaaaatgtgtattaagtagaattatttat |
211 |
Q |
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| T |
17971030 |
ttagattttcaacttatgaattcctactaaacattgaagtattacctgtcttttttttccttaaaccaaaacaagatgggtactaagtagaacttttttt |
17971129 |
T |
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| Q |
212 |
ctttcatttt |
221 |
Q |
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| T |
17971130 |
ctttcatttt |
17971139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 20988974 - 20988873
Alignment:
| Q |
120 |
tttcaacctacggatttctactaaacaatgaagtattactagttatccttccttaaaccaaaacaaaatgtgtattaagtagaattatttatctttcatt |
219 |
Q |
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|||||||||| |||| |||||||||| |||| | ||| | | |||||||||||||||||| || ||| ||| ||||||||| | ||||||||| ||| |
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| T |
20988974 |
tttcaacctatagattcctactaaacattgaaattttatcatctttccttccttaaaccaaaataagatgggtactaagtagaactttttatctttaatt |
20988875 |
T |
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| Q |
220 |
tt |
221 |
Q |
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|| |
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| T |
20988874 |
tt |
20988873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 20319401 - 20319330
Alignment:
| Q |
114 |
ttagattttcaacctacggatttctactaaacaatgaagtattactagttatccttccttaaaccaaaacaa |
185 |
Q |
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| T |
20319401 |
ttagatttacaacctacatattcctactaaatagtgaagtattaccaaccatccttccttaaaccaaaacaa |
20319330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 22346588 - 22346647
Alignment:
| Q |
173 |
taaaccaaaacaaaatgtgtattaagtagaattatttatctttcattttacgagatagat |
232 |
Q |
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| T |
22346588 |
taaaacaaaacaagacgagtattaagtagaactatttatcattcatttttcgagatagat |
22346647 |
T |
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