View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17205_high_8 (Length: 327)

Name: NF17205_high_8
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17205_high_8
NF17205_high_8
[»] chr6 (3 HSPs)
chr6 (5-310)||(11775515-11775818)
chr6 (3-46)||(13343554-13343597)
chr6 (3-31)||(13315759-13315787)
[»] chr3 (4 HSPs)
chr3 (149-257)||(15291313-15291420)
chr3 (148-311)||(10810686-10810847)
chr3 (193-288)||(10806193-10806288)
chr3 (148-198)||(10804739-10804789)
[»] chr7 (3 HSPs)
chr7 (148-257)||(20653394-20653502)
chr7 (149-257)||(47506119-47506226)
chr7 (165-257)||(24692788-24692880)
[»] scaffold0066 (1 HSPs)
scaffold0066 (164-291)||(34719-34846)
[»] chr4 (2 HSPs)
chr4 (164-291)||(12305097-12305224)
chr4 (185-257)||(25269635-25269707)
[»] chr1 (1 HSPs)
chr1 (149-257)||(23497743-23497850)
[»] chr5 (1 HSPs)
chr5 (168-257)||(1662682-1662771)
[»] chr2 (1 HSPs)
chr2 (165-257)||(18035047-18035139)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 310
Target Start/End: Original strand, 11775515 - 11775818
Alignment:
Q  5 ttggttttattttggtttttctttaattgaataatatataccgnnnnnnnnagggtaaaggaaattacagccgaagctgtaatcccataatatattgata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11775515 ttggttttattttggtttttctttaattgaataatatataccatttttttaagg-taaaggaaattacagccgaagctgtaatcccataatatattgata 11775613  T
Q  105 agaaagaagaatgtacaatgagcaacnnnnnnngagagggcacaaaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttatt 204  Q
    |||||||||||||||||||||| ||         ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11775614 agaaagaagaatgtacaatgag-aagaaaaaaaaagagggcacaaaaaccaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttatt 11775712  T
Q  205 agtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgagtatcaatagttaatccaaaattagcaagagagtctccacacttaatt 304  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11775713 agtaactaagtatgccctaataatagaaggtggttgagaaaaccaaacatgagtatcaatagttaatccaaaattagcaagagagtctgcacacttaatt 11775812  T
Q  305 ccctcc 310  Q
    ||||||    
T  11775813 ccctcc 11775818  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 13343554 - 13343597
Alignment:
Q  3 ggttggttttattttggtttttctttaattgaataatatatacc 46  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  13343554 ggttggttttgttatggtttttctttaattgaataatatatacc 13343597  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 13315759 - 13315787
Alignment:
Q  3 ggttggttttattttggtttttctttaat 31  Q
    |||||||||||||||||||||||||||||    
T  13315759 ggttggttttattttggtttttctttaat 13315787  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 15291420 - 15291313
Alignment:
Q  149 aaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaacc 248  Q
    ||||| ||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||||||||    
T  15291420 aaaaccaaaaccctcaa-ggttaagcaattctaaagttaggtaaacctagcttattagtcactaagtctgccctaatattatcaggaggttgagaaaacc 15291322  T
Q  249 aaacatgag 257  Q
    |||||||||    
T  15291321 aaacatgag 15291313  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 10810686 - 10810847
Alignment:
Q  148 aaaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaac 247  Q
    |||||| |||||  |||||||||||| |||||||||||||||| |||||| ||||||||  ||||||||||||||||||  |||| | ||||| | ||||    
T  10810686 aaaaaccaaaacaatcaaaggttaagtaaccctaaaattaggtgaacctaacttattagcgactaagtctgccctaata--agaatgtggttgtgtaaac 10810783  T
Q  248 caaacatgagtatcaatagttaatccaaaattagcaagagagtctccacacttaattccctcct 311  Q
    || ||||||| ||||| | |||| |||||||| |||||||| ||  |||||||  |||||||||    
T  10810784 catacatgagaatcaacatttaaaccaaaatttgcaagagaatcagcacacttgtttccctcct 10810847  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 10806193 - 10806288
Alignment:
Q  193 acctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgagtatcaatagttaatccaaaattagcaagaga 288  Q
    ||||||||||| ||  |||||||||||||||||||||||||| ||||| | |||||| ||||||| || || | |||| ||||||||  |||||||    
T  10806193 acctagcttataagcgactaagtctgccctaataatagaagggggttgtgtaaaccatacatgagaattaacatttaaaccaaaatttccaagaga 10806288  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 10804739 - 10804789
Alignment:
Q  148 aaaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctag 198  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  10804739 aaaaaccaaaaccctcaaaggttaagtaacgctaaaattaggtaaacctag 10804789  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 20653502 - 20653394
Alignment:
Q  148 aaaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaac 247  Q
    |||||| ||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  20653502 aaaaaccaaaaccctcaa-ggttaagcaattctaaagttaggtaaacctagcttattagtcactaagtcttccctaatattatcaggaggttgagaaaac 20653404  T
Q  248 caaacatgag 257  Q
    ||||||||||    
T  20653403 caaacatgag 20653394  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 47506119 - 47506226
Alignment:
Q  149 aaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaacc 248  Q
    ||||| ||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||| |    
T  47506119 aaaaccaaaaccctcaa-ggttaagcaattctaaagttaggtaaacctagcttattagtcactaagtctgccctaatattatcaggaggttgagaaaaac 47506217  T
Q  249 aaacatgag 257  Q
    |||||||||    
T  47506218 aaacatgag 47506226  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 24692788 - 24692880
Alignment:
Q  165 aaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgag 257  Q
    ||||||||| ||  ||||| ||||||||||||| ||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  24692788 aaggttaagcaattctaaagttaggtaaacctaacttattagtcactaagtctgccctaatattatcaggaggttgagaaaaccaaacatgag 24692880  T

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Target: scaffold0066 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 34719 - 34846
Alignment:
Q  164 aaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgagtatcaa 263  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| | ||||   ||||| ||||||| | |||    
T  34719 aaagattaagaaaccctaaaattaggtaaacctagctgatttgtaactaagtctgccataataatagaaggtgcttgattgaaccatacatgagaagcaa 34818  T
Q  264 tagttaatccaaaattagcaagagagtc 291  Q
    | | ||  |||| ||| |||||||||||    
T  34819 tggataggccaagatttgcaagagagtc 34846  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 12305224 - 12305097
Alignment:
Q  164 aaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgagtatcaa 263  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||   ||||| ||||||| | |||    
T  12305224 aaagattaggaaaccctaaaattaggtaaacctagctgattagtaactaagtctgccataataatagaaggtgcttgattgaaccatacatgagaagcaa 12305125  T
Q  264 tagttaatccaaaattagcaagagagtc 291  Q
    | | ||  |||| ||| |||||||||||    
T  12305124 tggataggccaagatttgcaagagagtc 12305097  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 25269635 - 25269707
Alignment:
Q  185 ttaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgag 257  Q
    ||||||||||||| ||||||||| |||||||||||||||| | ||  ||||||||||||||||||||||||||    
T  25269635 ttaggtaaacctaacttattagtcactaagtctgccctaacattatcaggaggttgagaaaaccaaacatgag 25269707  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 23497850 - 23497743
Alignment:
Q  149 aaaactaaaaccctcaaaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaacc 248  Q
    ||||| ||||||||||||| ||||||||  |  |||||||||||||||||||| ||    |||||||||||||||||| ||  |||||| ||||||||||    
T  23497850 aaaaccaaaaccctcaaag-ttaagaaattccgaaattaggtaaacctagcttgttgtgcactaagtctgccctaatactattaggaggatgagaaaacc 23497752  T
Q  249 aaacatgag 257  Q
    |||||||||    
T  23497751 aaacatgag 23497743  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 1662682 - 1662771
Alignment:
Q  168 gttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgag 257  Q
    |||||||||  || ||||||| |||||||| ||||||    | |||||||||||||||| ||  |||||| |||||||||||||||||||    
T  1662682 gttaagaaattctgaaattagataaacctaacttattgtgcaataagtctgccctaatactatcaggaggatgagaaaaccaaacatgag 1662771  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 18035047 - 18035139
Alignment:
Q  165 aaggttaagaaaccctaaaattaggtaaacctagcttattagtaactaagtctgccctaataatagaaggaggttgagaaaaccaaacatgag 257  Q
    ||||||||||||   | |||| ||||||||||||||| ||    |||||||||||||||||| ||  |||||| |||||||| ||||||||||    
T  18035047 aaggttaagaaattttgaaatcaggtaaacctagcttgttgtgcactaagtctgccctaatactattaggaggatgagaaaatcaaacatgag 18035139  T

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