View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17205_low_11 (Length: 283)

Name: NF17205_low_11
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17205_low_11
NF17205_low_11
[»] chr1 (9 HSPs)
chr1 (18-273)||(24415502-24415757)
chr1 (18-187)||(24322127-24322296)
chr1 (112-273)||(24365101-24365265)
chr1 (18-99)||(24366820-24366901)
chr1 (44-188)||(24309868-24310012)
chr1 (44-152)||(24340105-24340213)
chr1 (72-151)||(24365014-24365091)
chr1 (220-273)||(24367026-24367079)
chr1 (220-273)||(24369356-24369409)
[»] chr4 (1 HSPs)
chr4 (201-273)||(7822817-7822889)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 24415502 - 24415757
Alignment:
Q  18 ggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgtttgtaacagaaacttctga 117  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24415502 ggttttctcttatttcaaatcc-agttttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgttcgtaacagagacttctga 24415600  T
Q  118 acttcgatccatagctttggattcattg-tttaccggtaattctgctcctactttactcaaccctaattttgttcacaaacttgattttcctatcgaaat 216  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  24415601 acttcgatccatagctttggattcattgttttaccgatcattctgctcctactttacttaaccctaattttgttcacaaacttgatttacctatcaaaat 24415700  T
Q  217 tataggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 273  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  24415701 tataggttcatgtagagggttcatatttttttactcttatacaaacatttacctatg 24415757  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 24322127 - 24322296
Alignment:
Q  18 ggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgtttgtaacagaaacttctga 117  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | || |    
T  24322127 ggttttctcttatctcaaatcctcgttttgcaaattcacagtttctgaatactgctgcaacacacactcgtcgaattctgtttgtaacagaaattcctca 24322226  T
Q  118 acttcgatccatagctttggattcattgtttaccggtaattctgctcctactttactcaaccctaatttt 187  Q
    | ||||||| ||| |||| ||||||||||| |||  | |||||||||||  | ||||  |||||||||||    
T  24322227 atttcgatctatacctttagattcattgttcaccactgattctgctcctgttctactggaccctaatttt 24322296  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 273
Target Start/End: Original strand, 24365101 - 24365265
Alignment:
Q  112 ttctgaacttcgatccatagctttggattcattgtttaccggtaattctgctcctactttactcaaccctaattttg---ttcacaaacttgattttcct 208  Q
    |||| ||||||||||||||| |||||||||||||||||| | | ||||||||  | |||  || ||||| ||||||    || ||||||||||||||  |    
T  24365101 ttctaaacttcgatccatagttttggattcattgtttacagatcattctgcttttgcttctcttaaccccaattttccacttgacaaacttgattttgat 24365200  T
Q  209 atcgaaattataggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 273  Q
     |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  24365201 cttaaaattataggttcatgtagagggttcatatttttgtactcttatccaaacttttagctatg 24365265  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 24366820 - 24366901
Alignment:
Q  18 ggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgtt 99  Q
    ||||||||||| | |||||||||   |||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  24366820 ggttttctcttatctcaaatccttactttgcaaattcacagtttcagattactgctgcaacacacaatcatcaaattctgtt 24366901  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 24309868 - 24310012
Alignment:
Q  44 tttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcat 143  Q
    |||||||||||||| |||||  ||||| || |||||||||| ||| ||||||| ||  |||||| || | ||||| ||||||| |||||||| |||||||    
T  24309868 tttgcaaattcacattttcaacttacttcttcaacacacacccgtagaattctcttcataacaggaattcctgaatttcgatctatagctttagattcat 24309967  T
Q  144 tgtttaccggtaattctgctcctactttactcaaccctaattttg 188  Q
    |||||||   | ||||||||||| || || | |||||||||||||    
T  24309968 tgtttacttctgattctgctcctgctctattgaaccctaattttg 24310012  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 24340105 - 24340213
Alignment:
Q  44 tttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcat 143  Q
    |||||||||||||| |||||  ||||||||||||||||||||| | ||||||| ||  | |||| |||| ||||  ||||||  |||||| | ||||| |    
T  24340105 tttgcaaattcacactttcaagttactgctgcaacacacactcttagaattctcttcctgacagcaactcctgagtttcgatatatagctgtagattcgt 24340204  T
Q  144 tgtttaccg 152  Q
    |||||||||    
T  24340205 tgtttaccg 24340213  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 24365014 - 24365091
Alignment:
Q  72 ctgcaacacacactcgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcattgtttacc 151  Q
    ||||||| ||||||| ||||||||||||   ||  ||||||| |||| ||||||||||| |||| |||||||||||||||    
T  24365014 ctgcaacccacactcatcgaattctgttctcaa--gaaacttatgaagttcgatccataactttagattcattgtttacc 24365091  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 24367026 - 24367079
Alignment:
Q  220 aggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 273  Q
    |||||||||| ||||||| ||||| ||| |||||| | ||||||||||||||||    
T  24367026 aggttcatgtcgagggtttatattgttgcactcttcttcaaacatttacctatg 24367079  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 24369356 - 24369409
Alignment:
Q  220 aggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 273  Q
    |||||||||||||||||| ||| ||||||||||| |||| || |||||| ||||    
T  24369356 aggttcatgtagagggtttatacttttgtactctaatccgaaaatttacttatg 24369409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 7822817 - 7822889
Alignment:
Q  201 attttcctatcgaaattataggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 273  Q
    |||||||| | ||||||||||| |||||| |||||||  ||||||| |||  || |||| |||||||||||||    
T  7822817 attttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatg 7822889  T

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