View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17205_low_13 (Length: 275)

Name: NF17205_low_13
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17205_low_13
NF17205_low_13
[»] chr5 (2 HSPs)
chr5 (12-257)||(1318308-1318553)
chr5 (27-234)||(1283855-1284063)
[»] chr4 (2 HSPs)
chr4 (27-144)||(30007770-30007887)
chr4 (59-99)||(27808568-27808608)
[»] chr3 (1 HSPs)
chr3 (50-164)||(33695841-33695955)
[»] chr6 (2 HSPs)
chr6 (29-150)||(3911827-3911948)
chr6 (53-95)||(972819-972861)
[»] chr7 (3 HSPs)
chr7 (71-117)||(33928478-33928524)
chr7 (74-112)||(28944878-28944916)
chr7 (71-119)||(48892469-48892517)
[»] chr2 (1 HSPs)
chr2 (68-114)||(28206937-28206983)
[»] chr8 (1 HSPs)
chr8 (59-112)||(11747431-11747484)
[»] chr1 (1 HSPs)
chr1 (31-112)||(45594273-45594354)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 1318553 - 1318308
Alignment:
Q  12 atgaatatggttgatttattaggtgggcagctatagcaacacatcttccaggaaggactgataatgagataaagaatttttggaacacacatttaaagaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1318553 atgaatatggttgatttattaggtgggcagctatagcaacacatcttccaggaaggacagataatgagataaagaatttttggaacacacatttaaagaa 1318454  T
Q  112 aaagctaatgcaaatggggttagatccagtgacacacaagccaagaacagatcacctagaccttcttagcaatctacagcaaataatattgaatgctgca 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1318453 aaagctaatgcaaatggggttagatccagtgacacacaggccaagaacagatcacctagaccttcttagtaatctacagcaaataatattgaatgctgca 1318354  T
Q  212 aacattgtcacaagttgtgacataaataataatgctctaaggctac 257  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  1318353 aacattgtcacaagttgtgacataaacaataatgctctaaggctac 1318308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 1283855 - 1284063
Alignment:
Q  27 ttattaggtgggcagctatagcaacacatcttccagg-aaggactgataatgagataaagaatttttggaacacacatttaaagaaaaagctaatgcaaa 125  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||    
T  1283855 ttataaggtgggcatctatagcaacacatcttccagggaaggactgataatgaaataaagaatttttggaacacccatttaaagaaaaagttaatacaaa 1283954  T
Q  126 tggggttagatccagtgacacacaagccaagaacagatcacctagaccttcttagcaatctacagcaaataatattgaatgctgcaaacattgtcacaag 225  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| || |||| |||||||||||||| |||||||| |||||| | |     
T  1283955 tggggttagatccagtgacacacaagccaagaccagattacatagaccttcctagctatttacaacaaataatattgaaggctgcaaatattgtcgccaa 1284054  T
Q  226 ttgtgacat 234  Q
    |||||||||    
T  1284055 ttgtgacat 1284063  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 30007770 - 30007887
Alignment:
Q  27 ttattaggtgggcagctatagcaacacatcttccaggaaggactgataatgagataaagaatttttggaacacacatttaaagaaaaagctaatgcaaat 126  Q
    ||||||||||| |||||||||||   ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||  | |||||    
T  30007770 ttattaggtggtcagctatagcaggtcatctaccaggaaggactgataatgaaataaagaatttttggaacactcatttaaagaaaaagcttcttcaaat 30007869  T
Q  127 ggggttagatccagtgac 144  Q
    ||| |||||||| |||||    
T  30007870 gggattagatccggtgac 30007887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 27808568 - 27808608
Alignment:
Q  59 ccaggaaggactgataatgagataaagaatttttggaacac 99  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  27808568 ccaggaagaacagataatgagataaagaattattggaacac 27808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 33695841 - 33695955
Alignment:
Q  50 acacatcttccaggaaggactgataatgagataaagaatttttggaacacacatttaaagaaaaagctaatgcaaatggggttagatccagtgacacaca 149  Q
    |||||||| || ||||| || |||||||||||||||||||| |||||||| ||| | ||||||||| | || |||||||| || |||||| |||| |||     
T  33695841 acacatctacctggaagaacagataatgagataaagaatttctggaacactcatctgaagaaaaagttgattcaaatgggttttgatccaatgactcacc 33695940  T
Q  150 agccaagaacagatc 164  Q
    | |||||||| ||||    
T  33695941 aaccaagaactgatc 33695955  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 3911827 - 3911948
Alignment:
Q  29 attaggtgggcagctatagcaacacatcttccaggaaggactgataatgagataaagaatttttggaacacacatttaaagaaaaagctaatgcaaatgg 128  Q
    ||||||||| ||||||||||||||||| |  ||   || || ||||||||||||||||||| ||||||||||||| | ||||||| | |||   ||||||    
T  3911827 attaggtggtcagctatagcaacacatttggcaaagagaacagataatgagataaagaattattggaacacacatcttaagaaaaggttaacaaaaatgg 3911926  T
Q  129 ggttagatccagtgacacacaa 150  Q
    |  | |||||||| ||||||||    
T  3911927 gaattgatccagttacacacaa 3911948  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 972819 - 972861
Alignment:
Q  53 catcttccaggaaggactgataatgagataaagaatttttgga 95  Q
    |||||||||||||| ||||| |||||||| |||||||||||||    
T  972819 catcttccaggaagaactgacaatgagattaagaatttttgga 972861  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 33928524 - 33928478
Alignment:
Q  71 gataatgagataaagaatttttggaacacacatttaaagaaaaagct 117  Q
    |||||||| |||||||||| ||||||||||||| |||||||||||||    
T  33928524 gataatgatataaagaattattggaacacacatctaaagaaaaagct 33928478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 28944916 - 28944878
Alignment:
Q  74 aatgagataaagaatttttggaacacacatttaaagaaa 112  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  28944916 aatgagataaagaacttttggaacacacatttgaagaaa 28944878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 48892517 - 48892469
Alignment:
Q  71 gataatgagataaagaatttttggaacacacatttaaagaaaaagctaa 119  Q
    |||||||||||||||||||  |||||||||||| |||  ||||||||||    
T  48892517 gataatgagataaagaattactggaacacacatctaagtaaaaagctaa 48892469  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 28206937 - 28206983
Alignment:
Q  68 actgataatgagataaagaatttttggaacacacatttaaagaaaaa 114  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||    
T  28206937 actgataatgagatcaagaatgtgtggaacacacatttaaagaaaaa 28206983  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 11747431 - 11747484
Alignment:
Q  59 ccaggaaggactgataatgagataaagaatttttggaacacacatttaaagaaa 112  Q
    |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||    
T  11747431 ccaggaagaactgacaatgagatcaagaatttatggaacacacacttaaagaaa 11747484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 45594354 - 45594273
Alignment:
Q  31 taggtgggcagctatagcaacacatcttccaggaaggactgataatgagataaagaatttttggaacacacatttaaagaaa 112  Q
    ||||||||| ||||||||| | || || |||||||| || || |||||||| ||||| | ||||||||| ||||||||||||    
T  45594354 taggtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaa 45594273  T

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