View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17205_low_15 (Length: 257)

Name: NF17205_low_15
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17205_low_15
NF17205_low_15
[»] chr1 (8 HSPs)
chr1 (15-257)||(31260417-31260660)
chr1 (148-217)||(21535990-21536059)
chr1 (40-91)||(16114890-16114941)
chr1 (25-91)||(22624832-22624898)
chr1 (23-91)||(18827469-18827537)
chr1 (31-91)||(25402391-25402451)
chr1 (174-257)||(9638304-9638387)
chr1 (44-96)||(21536857-21536909)
[»] chr3 (16 HSPs)
chr3 (67-234)||(20338097-20338259)
chr3 (44-241)||(20290236-20290428)
chr3 (144-242)||(4839099-4839197)
chr3 (144-216)||(12750836-12750908)
chr3 (40-91)||(16223571-16223622)
chr3 (40-89)||(13906541-13906590)
chr3 (23-91)||(52935489-52935557)
chr3 (23-91)||(8881358-8881426)
chr3 (23-91)||(19912653-19912721)
chr3 (23-91)||(31283859-31283927)
chr3 (30-85)||(8145328-8145383)
chr3 (59-91)||(34276393-34276425)
chr3 (139-218)||(4952517-4952595)
chr3 (42-91)||(8765766-8765815)
chr3 (42-91)||(8770656-8770705)
chr3 (61-89)||(19167313-19167341)
[»] chr7 (15 HSPs)
chr7 (145-242)||(13281556-13281653)
chr7 (24-87)||(39270233-39270296)
chr7 (23-91)||(2506776-2506844)
chr7 (23-91)||(13287666-13287734)
chr7 (23-91)||(19154891-19154959)
chr7 (23-91)||(20754290-20754358)
chr7 (23-91)||(19201531-19201599)
chr7 (23-91)||(20577564-20577632)
chr7 (40-91)||(15170720-15170771)
chr7 (36-91)||(24194502-24194557)
chr7 (150-254)||(9786751-9786855)
chr7 (40-81)||(9761581-9761621)
chr7 (53-89)||(145076-145112)
chr7 (25-97)||(13281679-13281751)
chr7 (23-91)||(19201278-19201346)
[»] chr5 (9 HSPs)
chr5 (30-234)||(32415647-32415847)
chr5 (25-91)||(20860414-20860480)
chr5 (180-233)||(23125252-23125305)
chr5 (23-91)||(20548409-20548477)
chr5 (23-91)||(24320477-24320545)
chr5 (23-91)||(25572435-25572502)
chr5 (23-91)||(31600031-31600099)
chr5 (23-91)||(19053174-19053242)
chr5 (23-91)||(24262121-24262189)
[»] chr4 (9 HSPs)
chr4 (23-242)||(22346152-22346366)
chr4 (23-120)||(20319745-20319842)
chr4 (23-91)||(11782565-11782633)
chr4 (39-81)||(22090750-22090792)
chr4 (23-91)||(4617167-4617235)
chr4 (23-91)||(17108769-17108837)
chr4 (40-87)||(9054095-9054142)
chr4 (40-89)||(19919096-19919146)
chr4 (30-91)||(25096377-25096438)
[»] chr8 (13 HSPs)
chr8 (23-229)||(17970573-17970779)
chr8 (23-242)||(13833411-13833627)
chr8 (23-91)||(29765347-29765415)
chr8 (30-91)||(25227339-25227400)
chr8 (139-242)||(24751011-24751115)
chr8 (23-89)||(18570565-18570631)
chr8 (24-89)||(25180679-25180744)
chr8 (23-91)||(18446815-18446883)
chr8 (45-91)||(15176389-15176434)
chr8 (42-91)||(17510996-17511045)
chr8 (23-91)||(17100163-17100230)
chr8 (148-196)||(20989263-20989311)
chr8 (23-75)||(21316856-21316908)
[»] scaffold0340 (1 HSPs)
scaffold0340 (145-242)||(17079-17176)
[»] chr6 (11 HSPs)
chr6 (145-242)||(15552438-15552535)
chr6 (30-90)||(22569934-22569994)
chr6 (40-102)||(16167900-16167962)
chr6 (30-119)||(16175855-16175944)
chr6 (43-91)||(21845684-21845732)
chr6 (42-121)||(15551147-15551225)
chr6 (25-91)||(26820935-26821001)
chr6 (23-91)||(14273753-14273820)
chr6 (135-197)||(19721701-19721762)
chr6 (139-192)||(8322765-8322818)
chr6 (145-240)||(16175965-16176061)
[»] scaffold0072 (2 HSPs)
scaffold0072 (40-91)||(38381-38432)
scaffold0072 (145-240)||(38482-38578)
[»] chr2 (8 HSPs)
chr2 (23-85)||(25532309-25532371)
chr2 (39-91)||(28918277-28918329)
chr2 (23-82)||(25886156-25886215)
chr2 (23-91)||(20379359-20379427)
chr2 (42-91)||(27907478-27907527)
chr2 (23-91)||(25922678-25922746)
chr2 (42-85)||(31449851-31449894)
chr2 (22-85)||(32087120-32087183)
[»] scaffold0043 (1 HSPs)
scaffold0043 (23-91)||(88392-88460)
[»] scaffold0056 (1 HSPs)
scaffold0056 (23-91)||(23109-23177)
[»] scaffold0871 (1 HSPs)
scaffold0871 (23-91)||(4031-4099)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 31260660 - 31260417
Alignment:
Q  15 aatatgttaataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcata 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31260660 aatatgctaataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaaagaataaatttttagctttgcata 31260561  T
Q  115 tttttcagaagnnnnnnnnn-tacatttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcg 213  Q
    |||||||||||          ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  31260560 tttttcagaagaaaaaaaaaatatctttctaaagaggttgctcagatcatcatctcgtcccatttacagacttgactaacttacatcttccatgcaagcg 31260461  T
Q  214 ggataagcttagagaagatagctcatacttttagccacactttt 257  Q
    ||| | ||||||||||||||||||||||||||||||||||||||    
T  31260460 ggacaggcttagagaagatagctcatacttttagccacactttt 31260417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 21536059 - 21535990
Alignment:
Q  148 aggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggat 217  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  21536059 aggttgctcaaatcaacatctcatctcatttacagacttgactaacttaccacttccatgcaagcgggat 21535990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 16114890 - 16114941
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||| |||||    
T  16114890 tgtcatcacaaccccaaatttaaattgttgcttgtcttcaagtaacaaaaga 16114941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 22624898 - 22624832
Alignment:
Q  25 taacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||||| | ||| ||||||||||| |||||| |||||  |||||||||||||||||||| |||||    
T  22624898 taacataaaaagacctgtcatcacaaccccaaacttaaacggttgcttgtcctcaagtaacaaaaga 22624832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 18827469 - 18827537
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| |||  |||||||||| || ||| ||| ||||||| |||||||||||||||||||||    
T  18827469 aataacgtaagatgaccagtcatcacaaccctaaatttagattgttgtttgtcctcaagtaacgaaaga 18827537  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 25402451 - 25402391
Alignment:
Q  31 aagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||| ||| ||||||||||| |||||| ||| |||| |||||||||| |||||||||||||    
T  25402451 aagatgacctgtcatcacaaccccaaacttagattgctgcttgtcctaaagtaacgaaaga 25402391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 9638387 - 9638304
Alignment:
Q  174 catttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatacttttagccacactttt 257  Q
    ||||| ||| ||||||||||||||  ||| |||||||| |||| | ||||||| |||||| | |||||||| | ||||||||||    
T  9638387 cattttcaggcttgactaacttaccactttcatgcaagtgggacatgcttagaaaagataccacatactttcaaccacactttt 9638304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 21536909 - 21536857
Alignment:
Q  44 atcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaata 96  Q
    ||||||| | |||| ||||||||||||||||||||||||| | ||||| ||||    
T  21536909 atcacaacctcaaacttaaattgttgcttgtcctcaagtagcaaaagaaaata 21536857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 20338259 - 20338097
Alignment:
Q  67 ttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatatttttcagaagnnnnnnnnntacatttctaaagaggttgctcagatcatcat 166  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||   |||          ||||||||| ||||||||||||||||||||||    
T  20338259 ttgcttgtcctcaagtaacgaaagagaataaattttaaggtttgcatattttcaggaa-----aaacatacatttctgaagaggttgctcagatcatcat 20338165  T
Q  167 ctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatag 234  Q
    |||||| ||||||||||||||||||||||||  |||||||||||| | |||| ||||| |||||||||    
T  20338164 ctcgtcccatttacagacttgactaacttaccacttccatgcaagagagataggcttatagaagatag 20338097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 20290428 - 20290236
Alignment:
Q  44 atcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatatttttcagaagnnnnnnnnntacatttct 143  Q
    ||||||| ||||||  || ||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||| |          |||||||      
T  20290428 atcacaaccccaaacctagattgttgcttgtcgtcaagtaatgaaagagaataaattttaaggtttgcatatttttcagga----aaaacatacattttc 20290333  T
Q  144 aaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatac 241  Q
     |||||||| |||| ||||||||||| || |||||||||| |||||||||||||  |||||||||| ||| |||| ||||| ||||||||| ||||||    
T  20290332 gaagaggttactcaaatcatcatctcatc-catttacagagttgactaacttaccacttccatgcaggcgagataggcttatagaagatagttcatac 20290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 4839099 - 4839197
Alignment:
Q  144 aaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatact 242  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| || |   |||||||| ||||| ||||||    
T  4839099 aaagaggttgctcagatcgtcttctcgtctcatttacagacttgactaacttacaccttccatgaaagcgcgacagaattagagaatatagcccatact 4839197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 12750836 - 12750908
Alignment:
Q  144 aaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcggga 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||| ||||    
T  12750836 aaagaggttgctcagatcatcatctcgtcccatttacagacttgactaacatacacctttgatgcaagtggga 12750908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 16223571 - 16223622
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  16223571 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaagtaacgaaaga 16223622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 13906590 - 13906541
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaa 89  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  13906590 tgtcatcacaaccccaaagttaaattgttgcttgtcctcaagtaacgaaa 13906541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 52935557 - 52935489
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| | ||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  52935557 aataacgtaagatgacctatcatcacaaccccaaatttaaattgttgattgtcctcaagtaacgaaaga 52935489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 8881426 - 8881358
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| | ||||||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  8881426 aataacgtaagatgacatatcatcacaaccccaaacttagattgtttcttgtcctcaagtaacgaaaga 8881358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 19912653 - 19912721
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| |||||||| || |||||| ||||| |||||||| ||||||||||||||||||    
T  19912653 aataacgtaagatgacctgtcatcaaaaccccaaacttaaactgttgcttatcctcaagtaacgaaaga 19912721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 31283927 - 31283859
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| | ||| ||| ||||||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  31283927 aataacgttagatgacctgtcatcacaaccccaaacttaaactattgcttgtcctcaagtaacgaaaga 31283859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 8145328 - 8145383
Alignment:
Q  30 taagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaac 85  Q
    ||||| ||| ||||| ||||| |||||| |||||||||||||||||||||||||||    
T  8145328 taagatgacctgtcagcacaaccccaaacttaaattgttgcttgtcctcaagtaac 8145383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 34276425 - 34276393
Alignment:
Q  59 ttaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||||||||||||||||||||||||||||||    
T  34276425 ttaaattgttgcttgtcctcaagtaacgaaaga 34276393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 4952595 - 4952517
Alignment:
Q  139 tttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggata 218  Q
    |||| |||||||||||||  |||||||| || |||||||||||  ||||||||||||||  ||| |||||||| ||||||    
T  4952595 tttccaaagaggttgctcgaatcatcat-tcatctcatttacaagcttgactaacttaccgctttcatgcaagagggata 4952517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 8765766 - 8765815
Alignment:
Q  42 tcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||| |||||| |||||  |||||||||||| |||||||||||||    
T  8765766 tcatcacaaccccaaacttaaacggttgcttgtcctgaagtaacgaaaga 8765815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 8770656 - 8770705
Alignment:
Q  42 tcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||| |||||| |||||  |||||||||||| |||||||||||||    
T  8770656 tcatcacaaccccaaacttaaacggttgcttgtcctgaagtaacgaaaga 8770705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 19167341 - 19167313
Alignment:
Q  61 aaattgttgcttgtcctcaagtaacgaaa 89  Q
    |||||||||||||||||||||||||||||    
T  19167341 aaattgttgcttgtcctcaagtaacgaaa 19167313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 13281653 - 13281556
Alignment:
Q  145 aagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatact 242  Q
    ||||||||||| |||||||||||||||| ||||||||| || |||||| |||||||||||||||||| |||| || ||||||||||||| || |||||    
T  13281653 aagaggttgcttagatcatcatctcgtcccatttacaggctcgactaaattacaccttccatgcaagtgggacaatcttagagaagataacttatact 13281556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 39270296 - 39270233
Alignment:
Q  24 ataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacga 87  Q
    ||||| ||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  39270296 ataacgtaagatgacatgtcatcacaaccccaaacttaaattgttgcttgtcctcaagtaacga 39270233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 2506844 - 2506776
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| |||||| ||||||||||||||||||| ||||||    
T  2506844 aataacgtaagatgacctgtcatcacaaccccaaacttaaatagttgcttgtcctcaagtaaagaaaga 2506776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 13287734 - 13287666
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||||||    
T  13287734 aataacgtaagatgacttgtcatcacaaccccaaacttagactgtttcttgtcctcaagtaacgaaaga 13287666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 19154891 - 19154959
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| ||||  |||||||||||||||||||||||||||    
T  19154891 aataacgtaagatgacctgtcatcacaaccccaaacttaatctgttgcttgtcctcaagtaacgaaaga 19154959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 20754290 - 20754358
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| ||||  |||||||||||||||||||||||||||    
T  20754290 aataacgtaagatgacctgtcatcacaaccccaaacttaatctgttgcttgtcctcaagtaacgaaaga 20754358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 19201531 - 19201599
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||||||||| ||| ||||||||||| |||||| ||| | ||||||||||| | |||||||||||||    
T  19201531 aataacataagatgacctgtcatcacaaccccaaacttagactgttgcttgtcttgaagtaacgaaaga 19201599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 20577564 - 20577632
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| ||| || ||| | |||||||||||||||||||||||||||    
T  20577564 aataacgtaagatgacatgtcatcacaaccccgaacttagactgttgcttgtcctcaagtaacgaaaga 20577632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 15170771 - 15170720
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||||| ||||||  |||| |||||||||||||||||||||||||||    
T  15170771 tgtcatcacaaccccaaacataaactgttgcttgtcctcaagtaacgaaaga 15170720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 24194502 - 24194557
Alignment:
Q  36 gacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||||||||| | |||| ||||| |||||||||| ||||||||||||||||    
T  24194502 gacttgtcatcacaacctcaaacttaaactgttgcttgttctcaagtaacgaaaga 24194557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 9786855 - 9786751
Alignment:
Q  150 gttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatacttttagcc 249  Q
    |||||||| |||||  ||| |||||||||| ||| |||||||||||||  ||| ||||||| |  || | | ||||||||||||| ||||||| | ||||    
T  9786855 gttgctcatatcattgtcttgtctcatttatagaattgactaacttaccactttcatgcaaacatgacaggtttagagaagatagttcatactctcagcc 9786756  T
Q  250 acact 254  Q
    |||||    
T  9786755 acact 9786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 9761581 - 9761621
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaag 81  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  9761581 tgtcatcacaaccccaaa-ttaaattgttgcttgtcctcaag 9761621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 145076 - 145112
Alignment:
Q  53 ccaaaattaaattgttgcttgtcctcaagtaacgaaa 89  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  145076 ccaaacttaaactgttgcttgtcctcaagtaacgaaa 145112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 13281751 - 13281679
Alignment:
Q  25 taacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataa 97  Q
    |||||||||| ||  ||||||||||| || ||| ||||| ||||| |||||||||||||  |||||| |||||    
T  13281751 taacataagatgaactgtcatcacaacccaaaacttaaactgttgattgtcctcaagtattgaaagataataa 13281679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 19201346 - 19201278
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||  ||||||||||| ||||||  || | |||||||||| ||||||||||||||||    
T  19201346 aataacgtaagatgatctgtcatcacaaccccaaacatagactgttgcttgttctcaagtaacgaaaga 19201278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 32415847 - 32415647
Alignment:
Q  30 taagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatatttttcagaagnnnn 129  Q
    ||||| ||| ||||||||||| || ||| |||||  |||| |||| ||||||||||||||||||||||||||| | |||||||||||||  || |         
T  32415847 taagatgacatgtcatcacaaccctaaacttaaaccgttgtttgttctcaagtaacgaaagagaataaattttaaactttgcatattttctagga----a 32415752  T
Q  130 nnnnntacatttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaa 229  Q
         ||| |||   ||||||||||||| ||||||   ||||||||||||||||||||||||||||||  ||| |||||||| |||| || |||||||||    
T  32415751 aaacataccttttcgaagaggttgctcatatcatcgcatcgtctcatttacagacttgactaacttactactttcatgcaagtgggacaaacttagagaa 32415652  T
Q  230 gatag 234  Q
    |||||    
T  32415651 gatag 32415647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 20860414 - 20860480
Alignment:
Q  25 taacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||| ||||| ||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  20860414 taacgtaagatgacctgtcatcacaaccccaaacttaaactgttgcttgtcctcaagtaacgaaaga 20860480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 23125252 - 23125305
Alignment:
Q  180 cagacttgactaacttacaccttccatgcaagcgggataagcttagagaagata 233  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  23125252 cagacttgactaacttaccacttccatgcaagcgggacaagcttagagaagata 23125305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 20548477 - 20548409
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| |||||||| || |||||| ||| |||||||||||||||||||||||||||||    
T  20548477 aataacgtaagatgacctgtcatcaaaaccccaaacttagattgttgcttgtcctcaagtaacgaaaga 20548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 24320545 - 24320477
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||| ||| |||||| ||||||||||||||||||| |||||||||||||    
T  24320545 aataacgtaagatgacctgtcatctcaaccccaaacttaaattgttgcttgtccttaagtaacgaaaga 24320477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 25572502 - 25572435
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| || || ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||    
T  25572502 aataacgtaggatgacttgtcatcacaa-cccaaacttaaattgttgcttgttctcaagtaacgaaaga 25572435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 31600099 - 31600031
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| |||||| |||||||||| |||||||||||||||    
T  31600099 aataacgtaagaggacctgtcatcacaaccccaaacttaaatggttgcttgtcatcaagtaacgaaaga 31600031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 19053174 - 19053242
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||| | ||| ||||||||||| |||||| ||| | |||||||||||||||| ||||||||||    
T  19053174 aataacgtaaaatgacatgtcatcacaaccccaaacttagactgttgcttgtcctcaattaacgaaaga 19053242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 24262121 - 24262189
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| || |||||||| |||||| ||||| | ||| ||||||| |||||||||||||    
T  24262121 aataacgtaagatgacctgccatcacaaccccaaacttaaactattgtttgtcctaaagtaacgaaaga 24262189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 22346152 - 22346366
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatatttttca- 121  Q
    |||||| ||||| ||||||||||||||| || ||| |||||||||||||| ||||||||||| ||||||  ||||||||  |  ||||||||||||| |     
T  22346152 aataacgtaagatgacttgtcatcacaacccgaaacttaaattgttgcttatcctcaagtaatgaaagaatataaatttcaatatttgcatattttttac 22346251  T
Q  122 gaagnnnnnnnnntacatttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagc 221  Q
    |||          |||| ||   |||||||||||| ||||||||||||||| |||||||| |||||||||||||||  ||||||||||| ||| | ||      
T  22346252 gaa------aacatacagtttcgaagaggttgctcggatcatcatctcgtcccatttacatacttgactaacttaccacttccatgcaaccggtacaatt 22346345  T
Q  222 ttagagaagatagctcatact 242  Q
    ||| | |||||||||||||||    
T  22346346 ttacaaaagatagctcatact 22346366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 20319842 - 20319745
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatatttttc 120  Q
    |||||||||||| ||||||||||||||  | |||| |||| |||||||||| ||||||||||| ||||| | ||||| || |  |||||| |||||||    
T  20319842 aataacataagatgacttgtcatcacagcctcaaacttaagttgttgcttggcctcaagtaacaaaagaaagtaaatcttaaattttgcaaatttttc 20319745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 11782565 - 11782633
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| | ||||||||| |||||| ||||| || ||||||||||||||||||||||||    
T  11782565 aataacgtaagatgacctatcatcacaaccccaaacttaaaatggtgcttgtcctcaagtaacgaaaga 11782633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 22090750 - 22090792
Alignment:
Q  39 ttgtcatcacaatcccaaaattaaattgttgcttgtcctcaag 81  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  22090750 ttgtcatcacaatcccaaacttgaattgttgcttgtcctcaag 22090792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 4617167 - 4617235
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| ||| |  ||||||| ||||||||||||||||||    
T  4617167 aataacgtaagatgacctgtcatcacaaccccaaacttagacggttgcttatcctcaagtaacgaaaga 4617235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 17108769 - 17108837
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||||||||||| | | |||||| ||||| | || ||||||||||||||||||||||    
T  17108769 aataacgtaagatgacttgtcatcccgaccccaaacttaaaatttttcttgtcctcaagtaacgaaaga 17108837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 9054095 - 9054142
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacga 87  Q
    ||||||||||| |||||| |||||||||  ||||||||||||||||||    
T  9054095 tgtcatcacaaccccaaacttaaattgtcacttgtcctcaagtaacga 9054142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 19919146 - 19919096
Alignment:
Q  40 tgtcatcacaatcccaaaa-ttaaattgttgcttgtcctcaagtaacgaaa 89  Q
    |||||||||||  |||||| |||||| ||||||||||||||||||||||||    
T  19919146 tgtcatcacaactccaaaacttaaatggttgcttgtcctcaagtaacgaaa 19919096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 25096377 - 25096438
Alignment:
Q  30 taagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||| ||| |||||||||||  ||||| ||| | ||||||||||| |||||||||||||||    
T  25096377 taagatgacatgtcatcacaacaccaaacttagaatgttgcttgtcatcaagtaacgaaaga 25096438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 17970573 - 17970779
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaac----gaaagagaataaatttttagctttgcatatttt 118  Q
    |||||||| ||| ||| ||||||||||| |||||| |||||||||||||||||||  |||||     ||||||||||||||| | | | |||||||||||    
T  17970573 aataacatcagatgacctgtcatcacaaccccaaacttaaattgttgcttgtccttgagtaattaatgaaagagaataaattataaacattgcatatttt 17970672  T
Q  119 tcagaagnnnnnnnnntacatttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggata 218  Q
    |||| |          ||| |||   |||||||||||||||||||||||||||| ||| |||| |||||||||||||||  |||| ||||||| |||| |    
T  17970673 tcagga----aaaacataccttttcgaagaggttgctcagatcatcatctcgtcccatgtacatacttgactaacttaccacttcaatgcaagtgggaca 17970768  T
Q  219 agcttagagaa 229  Q
    |||||| ||||    
T  17970769 agcttaaagaa 17970779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 13833627 - 13833411
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatattt--ttc 120  Q
    |||||| |||||  ||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||| ||||||||||   |||||||| |||  |||    
T  13833627 aataacgtaagattacttgtcatcacaatgccaaacttaaattgttgcctgtcctcaggtaacgaaagaaaataaattttattctttgcattttttcttc 13833528  T
Q  121 agaagnnnnnnnnntacatttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaactta-caccttccatgcaagcgggataa 219  Q
    ||||          ||| ||||| ||||| ||||||||||| |||||| | |  ||||||| |||| ||| ||||| ||  |||||| ||| ||||| |     
T  13833527 agaa-----aaacatacctttctcaagagtttgctcagatcgtcatcttgacctatttacatactt-acttacttaccaatttccatccaaacgggacat 13833434  T
Q  220 gcttagagaagatagctcatact 242  Q
    |||||||||||||||||||||||    
T  13833433 gcttagagaagatagctcatact 13833411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 29765415 - 29765347
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  29765415 aataacgtaagatgacctgtcatcacaaccccaaacttaaattgttgcttgtcctcaagtaacgaaaga 29765347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 25227339 - 25227400
Alignment:
Q  30 taagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  25227339 taagatgacctgtcatcacaaccccaaacttaaattgttgcttgtcttcaagtaacgaaaga 25227400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 24751011 - 24751115
Alignment:
Q  139 tttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaactta-caccttccatgcaagcgggataagcttagagaagatagctc 237  Q
    |||| |||||||||||||| ||| | |||||| |  |||||||||||||||| ||||| ||| || ||| ||||||||| |||||||||||||| | |||    
T  24751011 tttccaaagaggttgctcatatcgtaatctcgaccgatttacagacttgacttacttaccactttacatccaagcgggacaagcttagagaagaaaactc 24751110  T
Q  238 atact 242  Q
    |||||    
T  24751111 atact 24751115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 18570565 - 18570631
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaa 89  Q
    |||||| ||||| ||  ||||||||||| |||||| ||| |||||||||||||| ||||||||||||    
T  18570565 aataacgtaagatgatctgtcatcacaaccccaaacttagattgttgcttgtccacaagtaacgaaa 18570631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 25180744 - 25180679
Alignment:
Q  24 ataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaa 89  Q
    ||||| ||||| ||| ||||||||||| |||||| |||||| ||| ||| ||||||||||||||||    
T  25180744 ataacgtaagatgacatgtcatcacaaccccaaacttaaatagtttcttatcctcaagtaacgaaa 25180679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 18446883 - 18446815
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| | ||||||||| |||||| ||||| ||||||||||||||  |||||||||||    
T  18446883 aataacgtaagatgacctatcatcacaaccccaaacttaaaatgttgcttgtcctcttgtaacgaaaga 18446815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 15176434 - 15176389
Alignment:
Q  45 tcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||    
T  15176434 tcacaaccccaaacttaaat-gttgcttgtcctcaagtaacgaaaga 15176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 17510996 - 17511045
Alignment:
Q  42 tcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||| | |||| ||||| | |||||||||||||||||||||||||    
T  17510996 tcatcacaacctcaaacttaaactattgcttgtcctcaagtaacgaaaga 17511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 17100230 - 17100163
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| | ||| ||| ||||||||||| |||||| ||| |||||||||||||||  ||||||||||||    
T  17100230 aataacttgagatgacctgtcatcacaa-cccaaacttagattgttgcttgtcctttagtaacgaaaga 17100163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 20989311 - 20989263
Alignment:
Q  148 aggttgctcagatcatcatctcgtctcatttacagacttgactaactta 196  Q
    |||||||| | || ||||||||||| ||||||||||||||||| |||||    
T  20989311 aggttgcttatatgatcatctcgtcccatttacagacttgacttactta 20989263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21316856 - 21316908
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtc 75  Q
    |||||| ||||| ||| ||||||||||| | |||| |||||||||||||||||    
T  21316856 aataacgtaagatgacctgtcatcacaacctcaaacttaaattgttgcttgtc 21316908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 17079 - 17176
Alignment:
Q  145 aagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatact 242  Q
    ||||||||||||| || ||| |||| |||||||| || |||||||||||||||  ||| ||||||||||||| | ||||||||||||||  |||||||    
T  17079 aagaggttgctcaaataatcctctcatctcatttccatacttgactaacttaccactttcatgcaagcgggacatgcttagagaagataattcatact 17176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 15552438 - 15552535
Alignment:
Q  145 aagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttacaccttccatgcaagcgggataagcttagagaagatagctcatact 242  Q
    ||||||||| | ||||||   |||| |||||||| ||||||||||||||||||  ||||  ||||||||| ||||||||||||||||||| |||||||    
T  15552438 aagaggttgataagatcagtgtctcctctcatttccagacttgactaacttaccacttcattgcaagcggaataagcttagagaagatagttcatact 15552535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 22569934 - 22569994
Alignment:
Q  30 taagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaag 90  Q
    ||||| ||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  22569934 taagatgacctgtcatcacaaccccaaacttaaattgttgtttgtcctcaagtaacgaaag 22569994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 16167900 - 16167962
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttt 102  Q
    |||||||||||||||||| |||||||  ||||||||||||||||| |||||| || |||||||    
T  16167900 tgtcatcacaatcccaaacttaaattaatgcttgtcctcaagtaatgaaagaaaacaaatttt 16167962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 16175855 - 16175944
Alignment:
Q  30 taagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatattttt 119  Q
    ||||| ||| |||||| ||||||||||| |||||||||||||||| |||| |||| |||||| || |||||||   |||||||| |||||    
T  16175855 taagatgacatgtcatgacaatcccaaacttaaattgttgcttgttctcatgtaatgaaagaaaacaaattttattctttgcattttttt 16175944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 21845732 - 21845684
Alignment:
Q  43 catcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||||| || ||| |||||||||||||||||||||||||||||||||    
T  21845732 catcacaacccaaaacttaaattgttgcttgtcctcaagtaacgaaaga 21845684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 15551147 - 15551225
Alignment:
Q  42 tcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaagagaataaatttttagctttgcatatttttca 121  Q
    ||||||||| |||||| |||||||||||||||||||||| |||  | ||| ||| |||||| | ||||||||||||||||    
T  15551147 tcatcacaaccccaaagttaaattgttgcttgtcctcaa-taagaatagaaaatgaattttaaactttgcatatttttca 15551225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 26820935 - 26821001
Alignment:
Q  25 taacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||| ||||| ||| |||||| |||| |||||| |||||||||| | ||||||||||||||||||||    
T  26820935 taacgtaagatgacctgtcattacaaccccaaacttaaattgttccatgtcctcaagtaacgaaaga 26821001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 14273753 - 14273820
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||  |||||||||||||||||| ||| ||||||||||| |||||||||| |||| |||||    
T  14273753 aataacgtaagttgacttgtcatcacaatcc-aaacttaaattgttgtttgtcctcaattaacaaaaga 14273820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 19721762 - 19721701
Alignment:
Q  135 tacatttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaacttac 197  Q
    ||||||||| ||||||  |||||||| ||||||||||| |||||||||| |||||| ||||||    
T  19721762 tacatttctgaagaggc-gctcagattatcatctcgtcccatttacagatttgacttacttac 19721701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 8322818 - 8322765
Alignment:
Q  139 tttctaaagaggttgctcagatcatcatctcgtctcatttacagacttgactaa 192  Q
    |||| |||||||||||| ||||||||   ||||||||||| |||||||||||||    
T  8322818 tttccaaagaggttgcttagatcatcgcttcgtctcatttccagacttgactaa 8322765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 16175965 - 16176061
Alignment:
Q  145 aagaggttgctcagatcatcatctcgtctcatttacagacttgactaactta-caccttccatgcaagcgggataagcttagagaagatagctcata 240  Q
    ||||||||||||| ||| |||||| | | |||||||| |||||||| || || | | |||||| ||||||||||| ||||| ||||| || ||||||    
T  16175965 aagaggttgctcaaatcgtcatctagacccatttacatacttgactgacatacctctttccatccaagcgggataggcttatagaagttatctcata 16176061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 38381 - 38432
Alignment:
Q  40 tgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  38381 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaagtaacgaaaga 38432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 38482 - 38578
Alignment:
Q  145 aagaggttgctcagatcatcatctcgtctcatttacagacttgactaactta-caccttccatgcaagcgggataagcttagagaagatagctcata 240  Q
    |||||||||||||||||||||| | ||| |||||| |||||| ||| ||||| ||| || | |  ||||||||||  |||||||||| |||||||||    
T  38482 aagaggttgctcagatcatcatattgtcccatttaaagactttacttacttaccacattgcttcaaagcgggatagacttagagaagttagctcata 38578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 25532309 - 25532371
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaac 85  Q
    |||||| ||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  25532309 aataacgtaaaatgacttgccatcacaaccccaaaattaaattgttgcttgtcctcaagtaac 25532371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 28918277 - 28918329
Alignment:
Q  39 ttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  28918277 ttgtcatcacaaccctaaacttaaattgttgcttgtcctcaagtaacgaaaga 28918329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 25886215 - 25886156
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagt 82  Q
    |||||| ||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  25886215 aataacgtaagatgacctgtcatcacaaccccaaacttaaattgttgcttgtcctcaagt 25886156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 20379359 - 20379427
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||||| ||| ||| ||||||||||| |||||| ||| | ||||||||||||||||||||| |||||    
T  20379359 aataacattagatgacctgtcatcacaaccccaaacttagactgttgcttgtcctcaagtaaccaaaga 20379427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 27907527 - 27907478
Alignment:
Q  42 tcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    ||||||||| |||||  ||||||||||||||||||||||||||| |||||    
T  27907527 tcatcacaaccccaattttaaattgttgcttgtcctcaagtaacaaaaga 27907478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 25922678 - 25922746
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| |||||  || ||||||||||| |||||| ||| | ||||||||||||||| |||||||||||    
T  25922678 aataacgtaagataacctgtcatcacaaccccaaacttagactgttgcttgtcctcatgtaacgaaaga 25922746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 31449894 - 31449851
Alignment:
Q  42 tcatcacaatcccaaaattaaattgttgcttgtcctcaagtaac 85  Q
    ||||||||| |||||| ||||| |||||||||||||||||||||    
T  31449894 tcatcacaaccccaaacttaaactgttgcttgtcctcaagtaac 31449851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 32087120 - 32087183
Alignment:
Q  22 taataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaac 85  Q
    ||||||| ||||| ||| |||||||||||  | ||| | |||||||||||||||||||||||||    
T  32087120 taataacgtaagatgacatgtcatcacaactcgaaactaaaattgttgcttgtcctcaagtaac 32087183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 88460 - 88392
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||||| ||||| ||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||||||    
T  88460 aataacgtaagatgacatgtcatcacaaccccaaacttaaattgttgtttgtcctcaattaacgaaaga 88392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 23109 - 23177
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
    |||| ||||||| ||| ||||||||||| |||||| ||| | ||||||||||| |||||||||||||||    
T  23109 aatagcataagatgacctgtcatcacaaccccaaacttagactgttgcttgtcttcaagtaacgaaaga 23177  T

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Target: scaffold0871 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 4031 - 4099
Alignment:
Q  23 aataacataagacgacttgtcatcacaatcccaaaattaaattgttgcttgtcctcaagtaacgaaaga 91  Q
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T  4031 aataacgtaagaggacctgtcatctcaaccctaaacttagactgttgcttgtcctcaagtaacgaaaga 4099  T

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