View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_low_18 (Length: 249)
Name: NF17205_low_18
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 36050053 - 36050284
Alignment:
| Q |
18 |
gttaaaatagagaaaataagggcaggaacatttatggtgaaggtcacatgtgaaaaaggaggtgacaagttggtttctattctagaggcctttgaagata |
117 |
Q |
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| T |
36050053 |
gttaaaatagataaaataagggcaggaacatttatggtgaaggtcacatgtgaaaaaggaggtgacaagttggtttctattctagaggcctttgaagata |
36050152 |
T |
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| Q |
118 |
tttgtgtgaatgttcaacaagcaagagtttcatgtaaaaatgagttttccattgaagctatcatagtggctgaggatcaaactcttgatgttacatatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36050153 |
tttgtgtgaatgttcaacaagcaagagtttcatgtaaaaatgagttttccattgaagctattatagtggctgaggatcaaactcttgatgttacatatat |
36050252 |
T |
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| Q |
218 |
tactcaagtgcttctaaaagctattggaaatc |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36050253 |
tactcaagtgcttctaaaagctattggaaatc |
36050284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 36029843 - 36030072
Alignment:
| Q |
18 |
gttaaaatagagaaaataagggcaggaacatttatggtgaaggtcacatgtgaaaaaggaggtgacaagttggtttctattctagaggcctttgaagata |
117 |
Q |
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|||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||| | ||| |||| || |||||||| | |
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| T |
36029843 |
gttaaaatagagaaaataagggaaggaacttttatggtaaaggtcacatgtgagaaaggaggtgacaagttggttccaattttagaagcttttgaagaga |
36029942 |
T |
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| Q |
118 |
tttgtgtgaatgttcaacaagcaagagtttcatgtaaaaatgagttttccattgaagctatcatagtggctgaggatcaaactcttgatgttacatatat |
217 |
Q |
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| T |
36029943 |
tgtgtgtgaatgttgaggaagcaagagtttcatgtgaaaatggattttctatggaagctattattgtggctgaggatgaaaatcttgatgttatagatgt |
36030042 |
T |
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| Q |
218 |
tactcaagtgcttctaaaagctattggaaa |
247 |
Q |
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| T |
36030043 |
taatgaagcgcttctaaaagctattggaaa |
36030072 |
T |
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