View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17205_low_19 (Length: 248)
Name: NF17205_low_19
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_19 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 36050860 - 36050626
Alignment:
| Q |
14 |
ataaataaaatattgattcggataagaagtcgatgtttcagtctaaaacaaagaagactttaaatttaaagaatactccctttaaaaatattagctagtc |
113 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36050860 |
ataaataaattattgattcagataagaagtcgatgtttcaatctaaaacaaagaagactttaaatttaaagaatactccctttaaaaatattagcgagtc |
36050761 |
T |
|
| Q |
114 |
gaacatcaaacctccttattcaaaaatatagtttagttgaatgagtgcccatcaactgaacacatacgactatactaatgttgggtgataaggggtcttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||| || |
|
|
| T |
36050760 |
gaacatcaaacctccttattcaaaaatatagtttagttgaatgagtgtccatcaactgaacacatatgattataccaatgttgggtgataaggggtcctg |
36050661 |
T |
|
| Q |
214 |
ggtatcatcatattgagttttcaacaacaaataaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36050660 |
ggtatcatcatattgagttttcaacaacaaataaa |
36050626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University