View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17205_low_2 (Length: 553)

Name: NF17205_low_2
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17205_low_2
NF17205_low_2
[»] chr1 (13 HSPs)
chr1 (10-501)||(24415772-24416263)
chr1 (10-529)||(24310164-24310701)
chr1 (10-191)||(24367472-24367650)
chr1 (10-267)||(24322997-24323255)
chr1 (74-252)||(24340654-24340832)
chr1 (74-252)||(24353019-24353197)
chr1 (380-439)||(24340467-24340526)
chr1 (380-439)||(24352832-24352891)
chr1 (74-136)||(24369800-24369862)
chr1 (404-439)||(24367206-24367241)
chr1 (375-429)||(24322835-24322889)
chr1 (427-528)||(24365324-24365432)
chr1 (223-267)||(24367390-24367434)
[»] chr5 (8 HSPs)
chr5 (74-336)||(42561973-42562235)
chr5 (76-141)||(9120117-9120182)
chr5 (91-141)||(179412-179462)
chr5 (405-529)||(29696199-29696329)
chr5 (74-136)||(29688488-29688550)
chr5 (156-190)||(29712166-29712200)
chr5 (77-129)||(29696602-29696654)
chr5 (404-468)||(42562297-42562361)
[»] chr4 (33 HSPs)
chr4 (74-141)||(7878737-7878804)
chr4 (74-134)||(7790441-7790501)
chr4 (74-134)||(7908663-7908723)
chr4 (77-529)||(49040795-49041252)
chr4 (77-138)||(48156072-48156133)
chr4 (76-128)||(50666682-50666734)
chr4 (74-129)||(7771761-7771816)
chr4 (74-141)||(7773465-7773532)
chr4 (79-138)||(48147358-48147417)
chr4 (77-190)||(48863573-48863683)
chr4 (74-135)||(48864395-48864456)
chr4 (74-135)||(49038518-49038579)
chr4 (76-141)||(49043810-49043875)
chr4 (74-134)||(7813838-7813898)
chr4 (74-141)||(45371714-45371781)
chr4 (74-141)||(48853035-48853102)
chr4 (77-129)||(7237386-7237438)
chr4 (74-134)||(7786825-7786885)
chr4 (74-134)||(7800998-7801058)
chr4 (74-136)||(45384532-45384594)
chr4 (214-347)||(48863392-48863528)
chr4 (84-134)||(48903316-48903366)
chr4 (76-125)||(37826632-37826681)
chr4 (85-134)||(47208238-47208287)
chr4 (74-134)||(7766003-7766063)
chr4 (296-351)||(49044057-49044112)
chr4 (287-324)||(48852849-48852886)
chr4 (76-141)||(49048197-49048262)
chr4 (89-141)||(45365875-45365927)
chr4 (81-121)||(48735058-48735098)
chr4 (74-126)||(48870929-48870981)
chr4 (74-126)||(48876233-48876285)
chr4 (74-126)||(48886615-48886667)
[»] chr6 (3 HSPs)
chr6 (287-351)||(21015965-21016029)
chr6 (79-141)||(21016175-21016237)
chr6 (88-128)||(14197337-14197377)
[»] chr3 (4 HSPs)
chr3 (77-134)||(11024146-11024203)
chr3 (77-136)||(11015134-11015193)
chr3 (77-134)||(11005571-11005628)
chr3 (104-141)||(47451570-47451607)
[»] chr7 (2 HSPs)
chr7 (74-141)||(48884178-48884245)
chr7 (88-129)||(30130916-30130957)
[»] chr8 (6 HSPs)
chr8 (74-134)||(15349244-15349304)
chr8 (77-136)||(12195683-12195742)
chr8 (77-136)||(12440111-12440170)
chr8 (86-136)||(4031578-4031628)
chr8 (101-139)||(4962186-4962224)
chr8 (212-264)||(10178221-10178273)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Complemental strand, 24416263 - 24415772
Alignment:
Q  10 tccaagaatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttg 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24416263 tccaacaatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgccctttg 24416164  T
Q  110 tattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24416163 tattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaa 24416064  T
Q  210 attcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgcaacaaagaaatctatctcatgacggaaagctaaccaatg 309  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24416063 attcaatatcacttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgcaacaaagaaatctatctcatgacggaaagctaaccaatg 24415964  T
Q  310 aatagccccattaaagaccgactctaccacgggataatcagaaccagaacacgggacctcactgcaaggaaaatgggtaggactcacaactacgttccac 409  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| | ||||||||    
T  24415963 aatagccccattgaagaccgactctaccacaggataatcagaaccagaacacgggacctcaatacaaggcaaatgggtaggactcacaatttcgttccac 24415864  T
Q  410 gcattagctctcaatgagaaaatcctcaagcgagatagcacatcacctgagtttggaatataggatattgaaactatcaagtaatcgtcttt 501  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||    
T  24415863 acattagctctcaatgagaaaatcctcaagcgagatagcacatcatctgagtttggaatataggatactgaaactaccaagtaatcgtcttt 24415772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 529
Target Start/End: Complemental strand, 24310701 - 24310164
Alignment:
Q  10 tccaagaatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttg 109  Q
    ||||| |||||||||||||||||||||||| |   ||||||||  || |||||||| ||  |  | ||||||||||||| ||||||| ||||||||||||    
T  24310701 tccaacaatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaagactgcactttg 24310602  T
Q  110 tattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaa 209  Q
    ||||||||||||||||||||||||||| ||||||    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || | |     
T  24310601 tattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccat 24310502  T
Q  210 attcaat------------atcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgcaacaaagaaatc---tatctcatgacg 294  Q
    |||||||            ||||| |||||||||||| ||||||||| |||||||  ||||||||||||   ||| ||   | ||   ||  ||||||||    
T  24310501 attcaatatcatcatcatgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacg 24310402  T
Q  295 gaaagctaaccaatgaatagccccattaaagaccgactctaccacgggataatcagaaccagaacacgggacctcact---gcaaggaaaatgggtagga 391  Q
     | ||| ||||| |||||||||||||| ||||| ||||||||||| | |||| || ||  ||||      | ||||||     |||| ||||| | ||||    
T  24310401 aatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaa------agctcactataaaaaggtaaatgtgcagga 24310308  T
Q  392 ctcacaactacgttccacgcattagctctcaatgagaaaatcctcaagcgagatagcacatcacctgagtttggaat------ataggatattgaaacta 485  Q
    ||||||| | |||| ||| |||||||||||| ||| |||||||  | ||||||||||||||||  ||||| ||||||      |||||||| | ||||||    
T  24310307 ctcacaatttcgttgcacacattagctctcattgaaaaaatccaaatgcgagatagcacatcatgtgagtatggaatacaatcataggatactaaaacta 24310208  T
Q  486 tcaagtaatcgtctttcgactcatcatacccaaaaccatagaaa 529  Q
     ||||||||| ||| | ||||| ||||| |||||||||||||||    
T  24310207 ccaagtaatcatctcttgactcgtcataaccaaaaccatagaaa 24310164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 24367650 - 24367472
Alignment:
Q  10 tccaagaatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttg 109  Q
    ||||| |||||||||| ||||||||||||| || ||| ||||||||||||||||||||||  | ||||||||||||||||||||||| || |||||||||    
T  24367650 tccaataatatcaccagtttttgtacaacatatagggaaaatgcgaggaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttg 24367551  T
Q  110 tattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaac 191  Q
    ||||||| ||| |||||||||| || | ||||  |   ||||||||||||||||||||||||||||||||||||||||||||    
T  24367550 tattcttccattacccatatataaagtgtatctct---cctcaaaacccatagactgagaaatcctctaaatacccataaac 24367472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 24323255 - 24322997
Alignment:
Q  10 tccaagaatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttg 109  Q
    ||||| |||||||||||||||||||||||| |   |||||| || | ||||||||  ||  |  |||||||||||||||||| |||||||||||||||||    
T  24323255 tccaacaatatcaccactttttgtacaacatacaagggaaacgccatgaatggtaagcaaatcaagaacaagagttttagtcgaagatgactgcactttg 24323156  T
Q  110 tattctttcatca----cccatatatcaactctatccttaaacct-caaaacccatagactgagaaatcctctaaatacccataaactataatctgtaga 204  Q
    |||||||||||||    |||||||||||||| || ||  |  ||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |       
T  24323155 tattctttcatcacccacccatatatcaacttta-cccaagtcctccaaaacccatagactgggaaatcctctaaatacccataaaccataatcttt--- 24323060  T
Q  205 ccaaaattcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggc 267  Q
    | |||  |||||||||| | ||| ||||||||||| || ||| |||||| ||| || ||||||    
T  24323059 cgaaacatcaatatcatctaggaaaggaatctctacaaattttctttccattagatcaaaggc 24322997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 24340832 - 24340654
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatc 24340733  T
Q  174 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttc 252  Q
    ||||| |||||||||||| | || | ||| | | |   |||| ||||| ||||||||||||||||| ||||||||||||    
T  24340732 ctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttc 24340654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 24353197 - 24353019
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatc 24353098  T
Q  174 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttc 252  Q
    ||||| |||||||||||| | || | ||| | | |   |||| ||||| ||||||||||||||||| ||||||||||||    
T  24353097 ctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttc 24353019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 24340526 - 24340467
Alignment:
Q  380 aaatgggtaggactcacaactacgttccacgcattagctctcaatgagaaaatcctcaag 439  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  24340526 aaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaag 24340467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 24352891 - 24352832
Alignment:
Q  380 aaatgggtaggactcacaactacgttccacgcattagctctcaatgagaaaatcctcaag 439  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  24352891 aaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaag 24352832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 24369862 - 24369800
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    |||||||||||||||||||||||||| ||||||   || | || |||||||||||||||||||    
T  24369862 agaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaact 24369800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Complemental strand, 24367241 - 24367206
Alignment:
Q  404 ttccacgcattagctctcaatgagaaaatcctcaag 439  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24367241 ttccacgcattagctctcaatgagaaaatccccaag 24367206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 24322889 - 24322835
Alignment:
Q  375 aaggaaaatgggtaggactcacaactacgttccacgcattagctctcaatgagaa 429  Q
    |||| ||||| ||||||| ||||| | |||||||||||||||||||||| |||||    
T  24322889 aaggcaaatgtgtaggacccacaatttcgttccacgcattagctctcaaagagaa 24322835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 528
Target Start/End: Complemental strand, 24365432 - 24365324
Alignment:
Q  427 gaaaatcctcaagcgagatagcacatcacctgagtttggaata------taggatattgaaactatcaagtaatcgtctttcgactcatca-tacccaaa 519  Q
    |||||||| | ||| |||||||||||||||||||||| |||||      ||||||| |||||| | ||||||||||||  | ||||  ||| ||||||||    
T  24365432 gaaaatccccgagcaagatagcacatcacctgagttttgaatataatcgtaggatagtgaaaccaccaagtaatcgtccattgacttgtcattacccaaa 24365333  T
Q  520 accatagaa 528  Q
    |||||||||    
T  24365332 accatagaa 24365324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 24367434 - 24367390
Alignment:
Q  223 tgggagaggaatctctagaagtttcctttccgttaaatgaaaggc 267  Q
    |||||||||||| || ||||||||||||||| ||||| |||||||    
T  24367434 tgggagaggaatatcgagaagtttcctttccattaaaagaaaggc 24367390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 74 - 336
Target Start/End: Original strand, 42561973 - 42562235
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 173  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |    |||||||| |||||||||||||||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacattatcgt---ccctcaaaatccatagactgagaaatc 42562069  T
Q  174 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgc--- 270  Q
    ||||||||||||| |||| | || || | ||   | | | ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||  |       
T  42562070 ctctaaatacccaaaaaccacaacctttggaattataattaatatcaattggaagaagaatctctagaagtttcctttccgttaaatgaaaggcaacaat 42562169  T
Q  271 aacaaagaaatctatctcatgacggaaagctaaccaatgaatagccccattaaagaccgactctac 336  Q
    ||||  |  || ||| |||||||| | ||| ||||| |||||||||||||| |||| |||||||||    
T  42562170 aacatggtcatatatatcatgacgaagagccaaccagtgaatagccccattgaagaacgactctac 42562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 9120182 - 9120117
Alignment:
Q  76 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||||||||  ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  91 ccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 529
Target Start/End: Complemental strand, 29696329 - 29696199
Alignment:
Q  405 tccacgcattagctctcaatgagaaaatcctcaagcgagatagcacatcacctgagtttggaat------ataggatattgaaactatcaagtaatcgtc 498  Q
    ||||| |||||||||||||||||||||| | |||| ||||||||| | || ||||| | ||| |      |||||| |||||||  | ||||||||| ||    
T  29696329 tccacacattagctctcaatgagaaaattcccaagtgagatagcataccatctgagctcggactcggttcataggacattgaaatcaccaagtaatcatc 29696230  T
Q  499 tttcgactcatcatacccaaaaccatagaaa 529  Q
    | | ||||| |||||||||||||||||||||    
T  29696229 tgttgactcgtcatacccaaaaccatagaaa 29696199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 29688550 - 29688488
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    ||||| ||||| || |||||||| || ||||| ||||||| ||||||||||||||| ||||||    
T  29688550 agaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaact 29688488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 29712166 - 29712200
Alignment:
Q  156 cccatagactgagaaatcctctaaatacccataaa 190  Q
    |||||||||||||| ||||||||||||||||||||    
T  29712166 cccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 129  Q
    |||||||| ||||||||||| || ||||| ||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 42562297 - 42562361
Alignment:
Q  404 ttccacgcattagctctcaatgagaaaatcctcaagcgagatagcacatcacctgagtttggaat 468  Q
    |||||| || ||||||||||| |||||| || |||| ||||||| |||||| |||||| ||||||    
T  42562297 ttccacacagtagctctcaataagaaaagccacaagtgagatagaacatcatctgagtatggaat 42562361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 7878804 - 7878737
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7790501 - 7790441
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  7790501 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7908723 - 7908663
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  7908723 agaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 529
Target Start/End: Original strand, 49040795 - 49041252
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctc 176  Q
    |||||| ||||| |||||||||| ||||||   ||||||| ||||||||||||||||||  |||  |    || | |||||||||||||||||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatc---ccccgaaacccatagactgagaaatcctt 49040891  T
Q  177 taaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttcc-gttaaatgaaagg----ctgca 271  Q
    ||||||||||||||  |  |||  ||||   |  ||||||||||| ||||||||| |||  |||||||| |||||||  ||||||||||||    |   |    
T  49040892 taaatacccataaatcacgatcattagaatcattttcaatatcatctgggagaggtatcaatagaagttccctttcctattaaatgaaaggacaacaata 49040991  T
Q  272 acaaagaaatctatctcatgacggaaagctaaccaatgaatagccccattaaagaccgactctaccacgggataatcagaaccagaacacgggacctcac 371  Q
    ||| | | |  ||| |||||||| ||||| ||||||||||||||||| || |||| ||| ||||||| |||||||| ||    || | ||  ||||| ||    
T  49040992 acataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtctaccatgggataataag----aggaaac--gaccttac 49041085  T
Q  372 tgc---aaggaaaatgggtaggactcacaactacgttccacgcattagctctcaatgagaaaatcctcaagcgagatagcacatcacctgagtttggaat 468  Q
    | |   ||||  ||||| ||| || ||||| | | |||||| |||||||| ||||||||||||||  |||| | |||||||  ||| ||||||| |||||    
T  49041086 tacaaaaaggccaatggatagtacccacaatttccttccacacattagctttcaatgagaaaatctccaagtgggatagcatgtcatctgagttcggaat 49041185  T
Q  469 ------ataggatattgaaactatcaagtaatcgtctttcgactcatcatacccaaaaccatagaaa 529  Q
          ||| |||| |||||| ||||||||||| ||| | |||  ||||||||||||||||||||||    
T  49041186 actatcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaa 49041252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 48156072 - 48156133
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactct 138  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactct 48156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  76 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccata 128  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 7771816 - 7771761
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 129  Q
    |||||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  7771816 agaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 7773465 - 7773532
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    |||||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7773465 agaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 48147358 - 48147417
Alignment:
Q  79 aagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactct 138  Q
    |||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactct 48147417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctc 176  Q
    |||||||||||| |||||||||| ||||||  |||||||| |||||||||||| |||||  ||   | |  || | ||||||||||||||||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaacctta---tgatcccccgaaacccatagactgagagatcctc 48863587  T
Q  177 taaatacccataaa 190  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 48864456 - 48864395
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaac 135  Q
    ||||||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  48864456 agaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaac 135  Q
    ||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 49043810 - 49043875
Alignment:
Q  76 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||| ||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatc 49043875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7813898 - 7813838
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||    
T  7813898 agaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 45371714 - 45371781
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||| |||||| ||||    
T  45371714 agaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 48853102 - 48853035
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||||||| ||||||||||| ||  ||||||||||||||||||| |||||||| |||||| ||||    
T  48853102 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatc 48853035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 129  Q
    |||||||||||||||||| | || |||| ||||||||||||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||| ||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7801058 - 7800998
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||| ||||    
T  7801058 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 45384532 - 45384594
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    |||||| |||| || |||||||| || |||||||| |||||||||||||||||||| ||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 347
Target Start/End: Complemental strand, 48863528 - 48863392
Alignment:
Q  214 aatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgcaacaa---agaaatctatctcatgacggaaagctaaccaatga 310  Q
    |||||||| | ||||||| |||  |||||||| ||||||||||||| |||||||  ||| ||   | | | |||| |||||||| ||||| |||||||||    
T  48863528 aatatcatctaggagaggtatcaatagaagttccctttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaagccaaccaatga 48863429  T
Q  311 atagccccattaaagaccgactctaccacgggataat 347  Q
    |||||||| || ||||  || ||||||| ||||||||    
T  48863428 atagccccgttgaagaaggagtctaccatgggataat 48863392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  84 ttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    |||||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  76 aacaagagttttagtccaagatgactgcactttgtattctttcatcaccc 125  Q
    ||||||||| ||||||||||| || |||| ||||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 47208287 - 47208238
Alignment:
Q  85 tttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||||||||| || |||||||||||||||||||||| ||| ||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    |||||||| || |||||||| || || | ||||||||||||||||||||||||||| ||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 49044057 - 49044112
Alignment:
Q  296 aaagctaaccaatgaatagccccattaaagaccgactctaccacgggataatcaga 351  Q
    ||||| ||||| ||||||||||||||||||| |||| |||||| || |||||||||    
T  49044057 aaagccaaccagtgaatagccccattaaagagcgaccctaccatggaataatcaga 49044112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 48852886 - 48852849
Alignment:
Q  287 tcatgacggaaagctaaccaatgaatagccccattaaa 324  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  48852886 tcatgacgaaaagccaaccaatgaatagccccattaaa 48852849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 49048197 - 49048262
Alignment:
Q  76 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||| ||| |||||||| || || |||||||| || ||||||||||||||||| |||||| ||||    
T  49048197 aacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatc 49048262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 45365875 - 45365927
Alignment:
Q  89 gtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    |||||||| ||  ||||||| |||||||||||||||||||| |||||| ||||    
T  45365875 gtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 48735058 - 48735098
Alignment:
Q  81 gagttttagtccaagatgactgcactttgtattctttcatc 121  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 48870981 - 48870929
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 126  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48870981 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48870929  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 48876285 - 48876233
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 126  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48876285 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48876233  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 48886667 - 48886615
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 126  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48886667 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48886615  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 21016029 - 21015965
Alignment:
Q  287 tcatgacggaaagctaaccaatgaatagccccattaaagaccgactctaccacgggataatcaga 351  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||| |||||| || |||||||||    
T  21016029 tcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctaccatggaataatcaga 21015965  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 21016237 - 21016175
Alignment:
Q  79 aagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    |||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||| ||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatc 21016175  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  88 agtccaagatgactgcactttgtattctttcatcacccata 128  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    |||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 11015134 - 11015193
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaact 11015193  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11005571 - 11005628
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    |||||||  ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 47451570 - 47451607
Alignment:
Q  104 actttgtattctttcatcacccatatatcaactctatc 141  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatc 47451607  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 48884245 - 48884178
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 141  Q
    ||||||||||| |||||||||||    |||||||||||||||||||||||| |||| |||||| ||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatc 48884178  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 30130916 - 30130957
Alignment:
Q  88 agtccaagatgactgcactttgtattctttcatcacccatat 129  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatat 30130957  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 15349304 - 15349244
Alignment:
Q  74 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 134  Q
    ||||||||| | || |||||||| || | ||||||||||||||||||||||||||| ||||    
T  15349304 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 12195742 - 12195683
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    |||||||| |||||||||||||| ||   |||||||||||||||| ||||||| ||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12195683  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 12440170 - 12440111
Alignment:
Q  77 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    |||||||| |||||||||||||| ||   |||||||||||||||| ||||||| ||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12440111  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 4031578 - 4031628
Alignment:
Q  86 ttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 136  Q
    ||||||||||| || |||| ||||||||||||||| |||||||| ||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 4031628  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 4962186 - 4962224
Alignment:
Q  101 tgcactttgtattctttcatcacccatatatcaactcta 139  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  4962186 tgcagtttgtattctttcatcacccatatttcaactcta 4962224  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 10178221 - 10178273
Alignment:
Q  212 tcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaa 264  Q
    |||| ||||||||||| | |||| ||||||||||||||||  |||||||||||    
T  10178221 tcaacatcatttgggaaaagaatatctagaagtttcctttttgttaaatgaaa 10178273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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