View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_low_3 (Length: 516)
Name: NF17205_low_3
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 48718174 - 48718673
Alignment:
| Q |
1 |
ttacatcaaaattcattactgtggagtctgccattctgatcttcaccaaatcaaaaatgatcttggcatgtccaattatcctatggttcccgggtatgtt |
100 |
Q |
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| T |
48718174 |
ttacatcaaaattcattactgtggagtctgccattctgatcttcaccaaatcaaaaatgatcttggcatgtccaattatcctatggttcccgggtatgtt |
48718273 |
T |
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| Q |
101 |
aacttttaaactctgatctatcgaatatgtgtctggtgtctgatacgacgtacacatataattatgccatctatcaaattatcacctgcatgtgtctggt |
200 |
Q |
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| T |
48718274 |
aacttttaaactctgatctatcgaatatgtgtctggtgtctgatactacgtacacatataattatgccatctatcaaattatcacctgcatgtgtctggt |
48718373 |
T |
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| Q |
201 |
gtttgttgatatgtccgtgtttcgattaattttaaggttcttagtgttgtatcttttattcagaaaaattaacatttatgattgttttgaaaaacaggca |
300 |
Q |
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| T |
48718374 |
gtttgttgatatgtccgtgtttcgattaattttaaggttcttagtgttgtatcttttattcagaaaaattaacgtttatgattgttttgaaaaacaggca |
48718473 |
T |
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| Q |
301 |
tgaagtggttggtgaggtactagaggtgggttcaaacgttacaaggttcaaagtgggagaaattgtgggagttggtcttctcgtcggttgttgcaaaagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48718474 |
tgaagtggttggtgaggtactagaggtgggttcaaatgttacaaggttcaaagtgggagaaattgtgggagttggtcttctcgttggttgttgcaaaagc |
48718573 |
T |
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| Q |
401 |
tgcagagcatgtgattctgagattgagcaatactgtaacaagaagatctggtcttacaatgatgtttacactgacggcaagatcactcagggtggctttg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48718574 |
tgcagagcatgtgattctgagattgagcaatactgtaacaagaagatctggtcttacaatgatgtttacactgacggcaagatcactcagggtggctttg |
48718673 |
T |
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