View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_low_4 (Length: 507)
Name: NF17205_low_4
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Complemental strand, 8707136 - 8706643
Alignment:
| Q |
14 |
gaagatggctggtcttggatgatactggtttttgcgttttcttagagtggaaggcgaactagatattttaatacaattgatcatctccaaaggtatatct |
113 |
Q |
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| T |
8707136 |
gaagatggctggtcttggatgatactggtttttgtgttttcttagagtggaaggcgaactagatattttaatacaattgatcatctccaaaggtatatct |
8707037 |
T |
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| Q |
114 |
gtagttgaatcacaagaggatgcctctaatcccccaaaataatcttgaaaggtactctcgttgttgtcttcaatttcaccgttctttaaagattgaaaac |
213 |
Q |
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| T |
8707036 |
gcagttgaatcacaagaggatgcctctaatcccccaaaataatcttgaaaggtactctcgttgttgtcttcaatttcaccgttctttaaagattgaaaac |
8706937 |
T |
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| Q |
214 |
aggtgcttccatgaacattaccatgtgttgatttcaacaattttgatgcacagtattcgcctgaactaggatgttcaagaaatgccgttgaagtatcaag |
313 |
Q |
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| T |
8706936 |
aggtgcttccatgaacattaccatgtgttgatttcaacaattttgatgcacagtattcgcctgaactaggatgttcaagaaatgccgttgaagtatcaag |
8706837 |
T |
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| Q |
314 |
aatatcgccacactgtaaaattgtagaagaaaataaacattatgaaagttcaatctatagcatttcaaaaggaagagaataacagccacgtcaaagtata |
413 |
Q |
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| T |
8706836 |
aatatcgccacactgtaaaattgtagaagaaaataaacattatgaaagttcaatctatagcatttcaaaaggaagagaataacagccacatcaaagtata |
8706737 |
T |
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| Q |
414 |
aagaaaagagtacttctgagtctattaaagaaaaacatcaaaactaactcaacctagatatttcatttcatccatgtactttttcacaatctat |
507 |
Q |
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| T |
8706736 |
aagaaaagagtacttctgagtctattaaagaaaaacatcaaaactaactcaacctagatatttcatttcatccatgtactttttcacaatctat |
8706643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 257 - 447
Target Start/End: Complemental strand, 8692121 - 8691930
Alignment:
| Q |
257 |
tgatgcacagtattcgcctgaactaggatgttcaagaaatgccgttgaagtatcaagaatatcgccacactgtaaaattgtagaagaaaataaacattat |
356 |
Q |
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| T |
8692121 |
tgatgcatagtattcgcttgagctaggatgctcaagaaacgccgttgaagtatccagaacattgcgacactgtaaaattttagaagaaaataaacaatat |
8692022 |
T |
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| Q |
357 |
gaaagttcaatcta-tagcatttcaaaaggaagagaataacagccacgtcaaagtataaagaaaagagtacttctgagtctattaaagaaaa |
447 |
Q |
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| T |
8692021 |
gaaattccattctagtagcatttcaaaaggaagagaaaaacagctacatcacagtatgaagaaaaaagaacttctgaatgtatcaaagaaaa |
8691930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 8692271 - 8692132
Alignment:
| Q |
14 |
gaagatggctggtcttggatgatactggtttttgcgttttcttagagtggaaggcgaactagatattttaatacaattgatcatctccaaaggtatatct |
113 |
Q |
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| T |
8692271 |
gaaggtggctggtcttggatgatactggtttttgtttcttcttagagtggaaggtgcactagaaatttcaaaacaattgatcatctctagaggtttatct |
8692172 |
T |
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| Q |
114 |
gtagttgaatcacaagaggatgcctctaatcccccaaaat |
153 |
Q |
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| T |
8692171 |
gcagatgagtcacaagaggatgcctccaatcccccgaaat |
8692132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 14384483 - 14384632
Alignment:
| Q |
14 |
gaagatggctggtcttggatgatactggtttttgcgttttcttagagtggaaggcgaactagatattttaatacaattgatcatctccaaaggtatatct |
113 |
Q |
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| T |
14384483 |
gaaggtggctggtcttggatgatactggtttttgtttcttcttagagtggaaggtgcactggaaatttcataacaattgatcatcttttgaggtttatct |
14384582 |
T |
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| Q |
114 |
gtagttgaatcacaagaggatgcctctaatcccccaaaataatcttgaaa |
163 |
Q |
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| T |
14384583 |
gcagttgagtcacaagaggatgcctccaatcccccgaaatcatctcgaaa |
14384632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 14384633 - 14384711
Alignment:
| Q |
257 |
tgatgcacagtattcgcctgaactaggatgttcaagaaatgccgttgaagtatcaagaatatcgccacactgtaaaatt |
335 |
Q |
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| T |
14384633 |
tgatgcatagtattcgcctgaactaggatgttcaagaaaagccgttgaagtatccagaacattgccatactgtaaaatt |
14384711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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