View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_low_5 (Length: 504)
Name: NF17205_low_5
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 26 - 464
Target Start/End: Original strand, 11035549 - 11035987
Alignment:
| Q |
26 |
atgtctcacctcccaccgccgccgcaaaaaccaccataaacccaccaagctcacccacttcactcccgtagtttccaaggaaatccaagagatcatccac |
125 |
Q |
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| T |
11035549 |
atgtctcacctcccaccgccgccgcaaaaaccaccataaaccaaccaagctcacccacttcactcccgtagtctccaaggaaatccaagagatcatccac |
11035648 |
T |
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| Q |
126 |
gcgccaccgttaccagagatccacgtcgacacagtgaaacttgagctccgacgtgtttccaccagtggagagagtaagggaggtggtagtgtgtgtgaaa |
225 |
Q |
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| T |
11035649 |
gcgccaccgttaccagagatccacgtcgacacagtgaagcttgagctccgacgtgtttccaccagtggagagagtaagggaggtggtagtgtgtgtgaaa |
11035748 |
T |
|
| Q |
226 |
ctgcatcttctattggaagtgttggaccggaagtttcgcatcttgggtgggggagatggtataccctaagagaacttgaagctgctactaatggtttgtg |
325 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11035749 |
ctgcgtcttctattggaagtgttggaccggaagtttcgcatcttgggtgggggagatggtatacgctaagagaacttgaagctgctactaatggtttgtg |
11035848 |
T |
|
| Q |
326 |
tgaagataatgttattggtgaaggtggttatggaattgtttatagtggtgttcttgttgatggtaccaagattgctgttaagaatcttttgaataacaag |
425 |
Q |
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| T |
11035849 |
tgaagataatgttattggtgaaggtggttatggaattgtttatagtggtgttcttgttgatggtaccaagattgctgttaagaatcttttgaataacaag |
11035948 |
T |
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| Q |
426 |
tatgtttatgttactcttaccttaatttatgttaatgtg |
464 |
Q |
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| T |
11035949 |
tatgtttatgttactcttaccttaatttatgttaatgtg |
11035987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 430
Target Start/End: Complemental strand, 29791150 - 29790967
Alignment:
| Q |
247 |
ttggaccggaagtttcgcatcttgggtgggggagatggtataccctaagagaacttgaagctgctactaatggtttgtgtgaagataatgttattggtga |
346 |
Q |
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||||||| ||||| || |||||||| ||||| ||||||||||| | |||| ||||||| ||||||| ||| |||||| || |||||| ||||||| |
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| T |
29791150 |
ttggacctgaagtgtcacatcttggatggggtagatggtatactttgcgagagcttgaagatgctactggtggattgtgtcctgaaaatgttcttggtga |
29791051 |
T |
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| Q |
347 |
aggtggttatggaattgtttatagtggtgttcttgttgatggtaccaagattgctgttaagaatcttttgaataacaagtatgt |
430 |
Q |
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| T |
29791050 |
aggtggttatggaattgtttaccatggtgttcttacggatggtactaaagttgctgtcaaaaatctcttgaataacaagtatgt |
29790967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 430
Target Start/End: Complemental strand, 7356925 - 7356836
Alignment:
| Q |
341 |
tggtgaaggtggttatggaattgtttatagtggtgttcttgttgatggtaccaagattgctgttaagaatcttttgaataacaagtatgt |
430 |
Q |
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||||||||||| ||||||||||| |||| |||||||||| |||| | ||| || ||||||| || || || ||||||||||||||||| |
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| T |
7356925 |
tggtgaaggtgattatggaattgcttattatggtgttcttattgaagatactaaagttgctgtcaaaaacctcttgaataacaagtatgt |
7356836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 6208905 - 6208943
Alignment:
| Q |
330 |
gataatgttattggtgaaggtggttatggaattgtttat |
368 |
Q |
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| T |
6208905 |
gataatgttattggtgaaggtggttatggaattgtttat |
6208943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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