View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_low_7 (Length: 428)
Name: NF17205_low_7
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 5465511 - 5465115
Alignment:
| Q |
18 |
tttttatgggaggaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgacttgatgaacaacaacaatgtca |
117 |
Q |
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| T |
5465511 |
tttttatgggaggaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgacttgatgaacaacagcaaagtca |
5465412 |
T |
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| Q |
118 |
tcaatgagttgtcgcaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccaccaccaatgatctgaatgtatg |
217 |
Q |
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| T |
5465411 |
acaatgagttgtcggaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccacca---atgatctgaatgtatg |
5465315 |
T |
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| Q |
218 |
aaagtgtggattgaaaataacaacataagtttcttttggtttttggattgaaaaataacaacaataagccttgttacaacattttaagtcagtacttgga |
317 |
Q |
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| T |
5465314 |
aaagtgtggattgaaaataacaacataagtttcttttggtttttggattgaaaaataacaacaataagccttgttacaacattttaagtcagtactttga |
5465215 |
T |
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| Q |
318 |
gtcttcaattttactttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtcatcattttacactttaagtttgttagaagttttgatga |
417 |
Q |
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| T |
5465214 |
gtcttcaattttactttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtcatcattttacactttaagtttgttagaagttttgatga |
5465115 |
T |
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