View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17205_low_8 (Length: 341)
Name: NF17205_low_8
Description: NF17205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17205_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 42422823 - 42423126
Alignment:
| Q |
22 |
ttaatactagaagataattatgctataatatatagaaatctttaaatatatgtctatataatctagtaagcaaaacaaatattcaattgcttatgccaca |
121 |
Q |
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| T |
42422823 |
ttaatactagaagataattatgctataatatatagaaatctttaaatatatgtccatataatctagtaagcaaaacaaatattcaattgcttatgccaca |
42422922 |
T |
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| Q |
122 |
agaaaaccctgtctaagacatgatacaaaatgcccacctacttttaacatcaattactaatttagacatgttaattgaaggatttgctagttaaatgatt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422923 |
agaaaaccctgtctaagacatgatacaaaatgcccacctacttttaacatcaattactaatttagacatgttaattgaaggatttgctagttaaatgatt |
42423022 |
T |
|
| Q |
222 |
aaaagagaaatgatttttgacctcggaattttagtgtcaaatggtgtcatatagagataaacatatataatatggttctgatatccttattttgatgttc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
42423023 |
aaaagagaaatgatttttgacctcggaattttagtgtcaaatgatgtcatatagagataaacatatataatatcgttctgatgtccttattttgatgttc |
42423122 |
T |
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| Q |
322 |
aaat |
325 |
Q |
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|||| |
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| T |
42423123 |
aaat |
42423126 |
T |
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