View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17206_high_4 (Length: 278)

Name: NF17206_high_4
Description: NF17206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17206_high_4
NF17206_high_4
[»] chr1 (8 HSPs)
chr1 (9-256)||(46396476-46396725)
chr1 (15-256)||(1282175-1282421)
chr1 (15-256)||(1283206-1283452)
chr1 (15-119)||(27850394-27850498)
chr1 (15-85)||(21487530-21487600)
chr1 (67-115)||(30294098-30294146)
chr1 (191-264)||(27850624-27850697)
chr1 (28-120)||(3701160-3701249)
[»] scaffold0245 (1 HSPs)
scaffold0245 (15-256)||(7855-8101)
[»] scaffold0229 (1 HSPs)
scaffold0229 (15-256)||(8183-8429)
[»] chr3 (11 HSPs)
chr3 (9-256)||(44441594-44441843)
chr3 (36-117)||(54393363-54393444)
chr3 (15-115)||(21984382-21984482)
chr3 (134-256)||(54393187-54393309)
chr3 (11-117)||(1902232-1902338)
chr3 (11-117)||(1911678-1911784)
chr3 (10-63)||(10480321-10480374)
chr3 (191-242)||(1902054-1902105)
chr3 (191-242)||(1911500-1911551)
chr3 (191-242)||(35864121-35864172)
chr3 (134-174)||(52259695-52259735)
[»] chr4 (9 HSPs)
chr4 (26-251)||(26333101-26333329)
chr4 (26-117)||(47552101-47552192)
chr4 (134-256)||(47551926-47552048)
chr4 (33-117)||(22087848-22087932)
chr4 (26-114)||(13035444-13035532)
chr4 (15-114)||(13028605-13028704)
chr4 (134-180)||(46732709-46732755)
chr4 (30-68)||(48662103-48662141)
chr4 (31-67)||(48290767-48290803)
[»] chr8 (7 HSPs)
chr8 (15-256)||(1336109-1336345)
chr8 (27-111)||(3310502-3310586)
chr8 (134-242)||(16340421-16340529)
chr8 (15-117)||(16340159-16340260)
chr8 (28-117)||(42164115-42164204)
chr8 (49-85)||(37728538-37728574)
chr8 (134-175)||(14539520-14539561)
[»] chr5 (7 HSPs)
chr5 (15-117)||(22399455-22399557)
chr5 (10-115)||(15726816-15726920)
chr5 (15-115)||(29368440-29368540)
chr5 (10-113)||(15810660-15810763)
chr5 (14-77)||(17229064-17229127)
chr5 (49-117)||(40909948-40910016)
chr5 (20-115)||(4930557-4930649)
[»] chr6 (2 HSPs)
chr6 (50-117)||(6822513-6822580)
chr6 (191-247)||(6822707-6822763)
[»] chr7 (2 HSPs)
chr7 (24-117)||(23756697-23756791)
chr7 (36-68)||(42935273-42935305)
[»] chr2 (3 HSPs)
chr2 (49-110)||(28529165-28529226)
chr2 (15-70)||(42531050-42531105)
chr2 (29-70)||(42071371-42071411)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 46396725 - 46396476
Alignment:
Q  9 agcagagacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaact 108  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||    
T  46396725 agcagtgacggatccaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgtcctctacgattattcatattattgaaact 46396626  T
Q  109 ttgaatgatatgtctctaga--aatataacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatg 206  Q
    |||||| ||||||||||| |  |||  ||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  46396625 ttgaataatatgtctctaaaataattaaacaaccatttaaccagtcatcccctacttgatttcgcatctaattgttaataatagtttgagatatatgatg 46396526  T
Q  207 ataagtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    |||||||| || ||| ||||||||||||| |||||| |||||||||||||    
T  46396525 ataagtgtgggccaagagagaaatgatttctgataagtgtgatccatgtg 46396476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 1282175 - 1282421
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1282175 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 1282274  T
Q  115 gatatgtctctagaaatat-----aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgata 209  Q
    |||||||||||| ||| ||     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || |    
T  1282275 gatatgtctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgaca 1282374  T
Q  210 agtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    ||||| || ||| | ||||||||||| |||||| |||||| ||||||    
T  1282375 agtgtgggccaagatagaaatgatttgtgataagtgtgattcatgtg 1282421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 1283206 - 1283452
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1283206 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 1283305  T
Q  115 gatatgtctctagaaatat-----aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgata 209  Q
    |||||||||||| ||| ||     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || |    
T  1283306 gatatgtctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgaca 1283405  T
Q  210 agtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    ||||| || ||| | ||||||||||| |||||| |||||| ||||||    
T  1283406 agtgtgggccaagatagaaatgatttgtgataagtgtgattcatgtg 1283452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 27850394 - 27850498
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| || |||||||||||| || |||||  |||||| ||||||||||| |||||||||| | ||||| |||| ||||| |||||||||||||||||    
T  27850394 gacggatccaagatttttgaataatgagggcatcatatatgaaaatttgtagtattaataattctcctctataatttttcattttatggaaactttgaat 27850493  T
Q  115 gatat 119  Q
    |||||    
T  27850494 gatat 27850498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 21487600 - 21487530
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctcta 85  Q
    ||||||| || ||| ||| |||||||| |||| |||||||||||||||||| ||||||||| |||||||||    
T  21487600 gacggatccatgatattttaatagtggaggcattatatataaaaatttgtaacattaataaatgttctcta 21487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 30294098 - 30294146
Alignment:
Q  67 cattaataattgttctctacaattattcatattatggaaactttgaatg 115  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  30294098 cattaataattgtcttctacaatttttcatattatggaaactttgaatg 30294146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 27850624 - 27850697
Alignment:
Q  191 tttgagatataagatgataagtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtggtgaaaat 264  Q
    ||||| |||||  ||||||||||| || |||||||||||| ||||||||||| |||| | |||||||| |||||    
T  27850624 tttgatatatataatgataagtgtgggccaaaagagaaataatttatgataagtgtggtacatgtggtcaaaat 27850697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 3701160 - 3701249
Alignment:
Q  28 tttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgatatg 120  Q
    ||||||||| |||||  ||| ||||||||||||||||| || |||  ||| | |||||  ||| ||||||||||| |||||||||||||||||    
T  3701160 tttttgaatggtggga-caccatatataaaaatttgtaacactaa--attatcctctaagatttttcatattatgaaaactttgaatgatatg 3701249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 7855 - 8101
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  7855 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 7954  T
Q  115 gatatgtctctagaaatat-----aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgata 209  Q
    |||||||||||| ||| ||     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || |    
T  7955 gatatgtctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgaca 8054  T
Q  210 agtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    ||||| || ||| | ||||||||||| |||||| |||||| ||||||    
T  8055 agtgtgggccaagatagaaatgatttgtgataagtgtgattcatgtg 8101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 8183 - 8429
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  8183 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 8282  T
Q  115 gatatgtctctagaaatat-----aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgata 209  Q
    |||||||||||| ||| ||     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || |    
T  8283 gatatgtctctataaaaataactaaacaatcatttaaccagtcatcccctacttgatttcgcatctaattcttaataatagtttgagatatatgacgaca 8382  T
Q  210 agtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    ||||| || ||| | ||||||||||| |||||| |||||| ||||||    
T  8383 agtgtgggccaagatagaaatgatttgtgataagtgtgattcatgtg 8429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 44441594 - 44441843
Alignment:
Q  9 agcagagacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaact 108  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||    
T  44441594 agcagtgacggatccaggatttttgaatagtggaggcactatatataaaaatttgtagtattaataattgtcctctacgattattcatattattgaaact 44441693  T
Q  109 ttgaatgatatgtctctaga--aatataacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatg 206  Q
    |||||| ||||||||||| |  |||  ||||| |||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  44441694 ttgaataatatgtctctaaaataattaaacaaccatttaaccaatcatcccctacttgatttcgcatctaattgttaataatagtttgagatatatgatg 44441793  T
Q  207 ataagtgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    ||||||||  | ||| ||||||||||||| |||||| |||||||||||||    
T  44441794 ataagtgtgcgccaagagagaaatgatttgtgataagtgtgatccatgtg 44441843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 54393444 - 54393363
Alignment:
Q  36 tagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgat 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  54393444 tagtgggggcactatatataaaaatttgtagcattaaaaattgtcctctacgattattcatattatggaaactttgaatgat 54393363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 21984482 - 21984382
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    |||||| ||||||||||||| || ||||||||  ||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||    
T  21984482 gacggaatcaggatttttgattattgggggcatcatatataaaaatttgtagcattaataattgtcctctagaatttttcatattattgaaactttgaat 21984383  T
Q  115 g 115  Q
    |    
T  21984382 g 21984382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 54393309 - 54393187
Alignment:
Q  134 aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgataagtgtaggtcaaaagagaaatgat 233  Q
    |||||| |||||||| ||||||||| ||||||||||| ||| || ||||| ||||||||||||||||| |||||||||| | |||||| ||| |||| ||    
T  54393309 aacaattatttaaccggtcatctccgacttgatttcgtatccaaatcttaataatagtttgagatatatgatgataagtatcggtcaagagataaattat 54393210  T
Q  234 ttatgataaatgtgatccatgtg 256  Q
    || ||||||||||| || |||||    
T  54393209 ttgtgataaatgtggtctatgtg 54393187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 1902338 - 1902232
Alignment:
Q  11 cagagacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaacttt 110  Q
    |||||| |||| |||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||| || ||  ||| ||| ||||||||||||||     
T  1902338 cagagaaggatccaggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 1902239  T
Q  111 gaatgat 117  Q
    |||||||    
T  1902238 gaatgat 1902232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 1911784 - 1911678
Alignment:
Q  11 cagagacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaacttt 110  Q
    |||||| |||| |||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||| || ||  ||| ||| ||||||||||||||     
T  1911784 cagagaaggatccaggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 1911685  T
Q  111 gaatgat 117  Q
    |||||||    
T  1911684 gaatgat 1911678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 10480321 - 10480374
Alignment:
Q  10 gcagagacggattcaggatttttgaatagtgggggcactatatataaaaatttg 63  Q
    |||| |||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  10480321 gcagtgacggattcatgatttttgaatagtggaggcaccatatataaaaatttg 10480374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 1902105 - 1902054
Alignment:
Q  191 tttgagatataagatgataagtgtaggtcaaaagagaaatgatttatgataa 242  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||||||||||    
T  1902105 tttgagatatatgatgatatgtgtagaccaaaagagaaatgatttatgataa 1902054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 1911551 - 1911500
Alignment:
Q  191 tttgagatataagatgataagtgtaggtcaaaagagaaatgatttatgataa 242  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||||||||||    
T  1911551 tttgagatatatgatgatatgtgtagaccaaaagagaaatgatttatgataa 1911500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 35864172 - 35864121
Alignment:
Q  191 tttgagatataagatgataagtgtaggtcaaaagagaaatgatttatgataa 242  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||    
T  35864172 tttgagatatatgatgatatgtgtaggccaaaagagaaatgatttgtgataa 35864121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 52259735 - 52259695
Alignment:
Q  134 aacaatcatttaaccagtcatctcctacttgatttcgcatc 174  Q
    ||||||||||||||||||||||||| | | |||||||||||    
T  52259735 aacaatcatttaaccagtcatctcccattcgatttcgcatc 52259695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 26333329 - 26333101
Alignment:
Q  26 gatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgatatgtctct 125  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |    
T  26333329 gatttttgaatagtcggggcactatatataaaaatttgtagcattaataattgtcctctacgattattcatattatggaaactttgaataatatgtctat 26333230  T
Q  126 agaaata---taacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgataagtgtaggtcaaa 222  Q
    | |||||    |||||||||||||||||||||| ||||||||||||| |||||||||||||  |||||||||||||||| ||| |||||||| || |||     
T  26333229 aaaaataactaaacaatcatttaaccagtcatcccctacttgatttcacatctaattcttaacaatagtttgagatatatgataataagtgtgggccaag 26333130  T
Q  223 agagaaatgatttatgataaatgtgatcc 251  Q
    |||||||| |||| || ||| ||||||||    
T  26333129 agagaaataatttgtggtaagtgtgatcc 26333101  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 47552192 - 47552101
Alignment:
Q  26 gatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgat 117  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| | || ||| ||||||||||||||||||||||||||||||    
T  47552192 gatttttgaatagtgggagcactatatataaaaatttgtaacattagtaattatcctttacgattattcatattatggaaactttgaatgat 47552101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 47552048 - 47551926
Alignment:
Q  134 aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgataagtgtaggtcaaaagagaaatgat 233  Q
    ||||||||||||| ||||||||||| ||||||||||| ||| |||| ||  ||||||||||||||||  |||||||||||  || ||| | |||||||||    
T  47552048 aacaatcatttaatcagtcatctccgacttgatttcgtatccaatttttcataatagtttgagatatttgatgataagtgcgggccaagaaagaaatgat 47551949  T
Q  234 ttatgataaatgtgatccatgtg 256  Q
    || |||||| |||| | ||||||    
T  47551948 ttgtgataagtgtggttcatgtg 47551926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 22087932 - 22087848
Alignment:
Q  33 gaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgat 117  Q
    ||||||| | ||||||||||||||||||||||| || |||||||| | |||||  ||| ||||||||||| ||||||||||||||    
T  22087932 gaatagtcgaggcactatatataaaaatttgtaacaataataattatcctctatgatttttcatattatgaaaactttgaatgat 22087848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 13035444 - 13035532
Alignment:
Q  26 gatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||||||||||| ||  || ||||||||||| ||  || |||||||||| | ||||||  || ||||||||||| |||||||||||    
T  13035444 gatttttgaatagtgaggataccatatataaaaaatttaagtattaataattatcctctacgttttttcatattatgaaaactttgaat 13035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 13028605 - 13028704
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| || ||||||||||||||| ||  || ||||||||||| ||  ||||||||||||| | ||||||  || || |||||||| ||| |||||||    
T  13028605 gacggatccaagatttttgaatagtgaggataccatatataaaaaatttaagcattaataattatcctctacgttttttaatattatgaaaattttgaat 13028704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 46732709 - 46732755
Alignment:
Q  134 aacaatcatttaaccagtcatctcctacttgatttcgcatctaattc 180  Q
    |||||||| |||||||||||||||| | |||||||||||||| ||||    
T  46732709 aacaatcaattaaccagtcatctcccatttgatttcgcatctgattc 46732755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 48662141 - 48662103
Alignment:
Q  30 tttgaatagtgggggcactatatataaaaatttgtagca 68  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  48662141 tttgaatagtgggggcactatatatgtaaatttgtagca 48662103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 48290767 - 48290803
Alignment:
Q  31 ttgaatagtgggggcactatatataaaaatttgtagc 67  Q
    |||||||||||||||||| |||||| |||||||||||    
T  48290767 ttgaatagtgggggcactttatatataaatttgtagc 48290803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 1336109 - 1336345
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||           
T  1336109 gacggatccaggatttttgaatagtgggggcactacatataaaaatttgtagcattagtaattgtcctctatgattattcatattatggaaac------- 1336201  T
Q  115 gatatgtctctagaaata---taacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgataag 211  Q
     || | ||| || |||||    |||||||||||||| ||||||| || ||||| |||| |||| |||| ||| ||||||||||||||||| |||||||||    
T  1336202 -atttctctgtataaataactaaacaatcatttaactagtcatccccgacttgttttctcatccaatttttaataatagtttgagatatatgatgataag 1336300  T
Q  212 tgtaggtcaaaagagaaatgatttatgataaatgtgatccatgtg 256  Q
    ||| || ||| ||||||||| ||| |||||| |||| | ||||||    
T  1336301 tgtgggccaagagagaaatgttttgtgataagtgtggttcatgtg 1336345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 3310502 - 3310586
Alignment:
Q  27 atttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttg 111  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  3310502 atttttgaatggtgggggcactatatatgaaaatttgtagcattaataattgtcctctactatttttcatattatggaaactttg 3310586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 16340421 - 16340529
Alignment:
Q  134 aacaatcatttaaccagtcatctcctacttgatttcgcatctaattcttagtaatagtttgagatataagatgataagtgtaggtcaaaagagaaatgat 233  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| ||||||| || ||||||||| |||||| | |||||| ||    
T  16340421 aacaatcatttaaccagtcatctccgatttgatttcacatctaattcttaataatagttttagatatatgacgataagtgtgggtcaagatagaaattat 16340520  T
Q  234 ttatgataa 242  Q
    || ||||||    
T  16340521 ttgtgataa 16340529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 16340159 - 16340260
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| || |||||||||| | ||| ||||||||| | ||||||| |||||||||||||| ||  ||||||||||||||||||| ||||||| |||||    
T  16340159 gacggatccaagatttttgaacaatggaggcactataaaaaaaaatt-gtagcattaataatagtcttctacaattattcatattacggaaactgtgaat 16340257  T
Q  115 gat 117  Q
    |||    
T  16340258 gat 16340260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 42164204 - 42164115
Alignment:
Q  28 tttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgat 117  Q
    ||||||||||||||||| |  |||||||||| |||||||||||||| ||| |  ||||||||| || |||||||||||| ||||||||||    
T  42164204 tttttgaatagtgggggtatcatatataaaattttgtagcattaatgattatcatctacaattttttatattatggaaattttgaatgat 42164115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 37728574 - 37728538
Alignment:
Q  49 atatataaaaatttgtagcattaataattgttctcta 85  Q
    |||||||||||||||||||||||||||||||||||||    
T  37728574 atatataaaaatttgtagcattaataattgttctcta 37728538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 14539561 - 14539520
Alignment:
Q  134 aacaatcatttaaccagtcatctcctacttgatttcgcatct 175  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||    
T  14539561 aacaatcatttaaccggtcatctcccactcgatttcgcatct 14539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 22399557 - 22399455
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||| |||    
T  22399557 gacggatccaggatttttgaatagtgggcgcactatatataaaaatttgtagcattagtaattgtcctatagaattattcatattatggaaactttaaat 22399458  T
Q  115 gat 117  Q
    |||    
T  22399457 gat 22399455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 15726816 - 15726920
Alignment:
Q  10 gcagagacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactt 109  Q
    |||| ||||||||||| |||||| |||||||||| ||| ||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  15726816 gcagcgacggattcagaattttttaatagtgggg-caccatataaaaaaatttgtagcattaataattgtcctctataatttttcatattatggaaactt 15726914  T
Q  110 tgaatg 115  Q
    ||||||    
T  15726915 tgaatg 15726920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 29368440 - 29368540
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaat 114  Q
    |||||| ||||||||||||| || ||||||||  ||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||    
T  29368440 gacggaatcaggatttttgattattgggggcatcatatataaaaatttgtagcattaataattgtcctctagaatttttcatattattgaaactttgaat 29368539  T
Q  115 g 115  Q
    |    
T  29368540 g 29368540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 15810660 - 15810763
Alignment:
Q  10 gcagagacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactt 109  Q
    |||| |||||||  ||||||||| |||||||| ||||  ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  15810660 gcagcgacggatctaggattttttaatagtggaggcatcatataaaaaaatttgtagcattaataattgtcctctacaatttttcatattacggaaactt 15810759  T
Q  110 tgaa 113  Q
    ||||    
T  15810760 tgaa 15810763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 17229127 - 17229064
Alignment:
Q  14 agacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataatt 77  Q
    |||||||| |||||||||||||||| |  || || |||||||||||||||||||||||||||||    
T  17229127 agacggatccaggatttttgaatagcgatggtaccatatataaaaatttgtagcattaataatt 17229064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 40909948 - 40910016
Alignment:
Q  49 atatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgat 117  Q
    ||||||||||||||||| |||||||||||  | | ||||||| || ||||||| |||||||||||||||    
T  40909948 atatataaaaatttgtaacattaataattaatatttacaattttttatattatagaaactttgaatgat 40910016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 4930557 - 4930649
Alignment:
Q  20 attcaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatg 115  Q
    |||||| |||||  |||||||| || |  |||||||||||||||||||||   ||||||| |||| ||||| | |||||||| |||||||||||||    
T  4930557 attcagaattttctaatagtggaggaatcatatataaaaatttgtagcat---taattgtcctctgcaattttccatattatagaaactttgaatg 4930649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 6822513 - 6822580
Alignment:
Q  50 tatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaactttgaatgat 117  Q
    |||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  6822513 tataaaaaaatttgtagcattaataattgtcctttacaatttttcatattatggaaactttgaatgat 6822580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 6822707 - 6822763
Alignment:
Q  191 tttgagatataagatgataagtgtaggtcaaaagagaaatgatttatgataaatgtg 247  Q
    ||||||||||| |||||||  ||| |||||| ||| ||||||||| |||||||||||    
T  6822707 tttgagatatatgatgatagatgtgggtcaagagaaaaatgatttgtgataaatgtg 6822763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 23756791 - 23756697
Alignment:
Q  24 aggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgttctcta--caattattcatattatggaaactttgaatgat 117  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    ||| || |||||||||||||||||||||||    
T  23756791 aggatatttgaatagtgggggcaccatatataaaaagttgtagcattaataattg-tctctaattgattttttatattatggaaactttgaatgat 23756697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 42935305 - 42935273
Alignment:
Q  36 tagtgggggcactatatataaaaatttgtagca 68  Q
    |||||||||||||||||||||||||||| ||||    
T  42935305 tagtgggggcactatatataaaaatttgcagca 42935273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 28529226 - 28529165
Alignment:
Q  49 atatataaaaatttgtagcattaataattgttctctacaattattcatattatggaaacttt 110  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||||||||| ||||||||    
T  28529226 atatataaaaatctgtagcattaataattgttctctccgatttttcatattatagaaacttt 28529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 42531105 - 42531050
Alignment:
Q  15 gacggattcaggatttttgaatagtgggggcactatatataaaaatttgtagcatt 70  Q
    |||| |||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  42531105 gacgaattcaggatttttgaatagtgggggcatcatatatgaaaatttgtagcatt 42531050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 42071371 - 42071411
Alignment:
Q  29 ttttgaatagtgggggcactatatataaaaatttgtagcatt 70  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  42071371 ttttgaatagtgggg-cactatatataaaaatttgtagcatt 42071411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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