View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17206_low_2 (Length: 418)
Name: NF17206_low_2
Description: NF17206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17206_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 52559558 - 52559167
Alignment:
| Q |
9 |
gacatcatcagtctgtctagcggtcggtgcttgtcgtatgattcctggtccctggatggatataatgcatttggctctgattttctgacccattttggaa |
108 |
Q |
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| T |
52559558 |
gacataatcagtctgtctagcgatcggtgcttgtcgtatgattcctggtccctggatggatataatgcatttggctctgattttctgacccattttggaa |
52559459 |
T |
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| Q |
109 |
ctcttgactcctgctatgatgccgaacattgaattcatggatttgcctacatataagaaaggattatggataacacagcaattgagtggcattgtgaatt |
208 |
Q |
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| T |
52559458 |
ctcttgactcctgctatgataccgaacattgaattcatggatttgcctacatataagaaaggattatggataacacagcaattgagtggcattgtgaatt |
52559359 |
T |
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| Q |
209 |
caaaaaatgtatttagttctgtcttatgataccaggaatcgcttcttgtagctttcaactaactccttaggatcagaacgtgttattttgtagccttcaa |
308 |
Q |
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| T |
52559358 |
caaaaaatgtatttagttctgtcttatgataccaggaatcgcttcttgtagctttcaactaactccttaggatcagaacgtgttattttgtagccttcaa |
52559259 |
T |
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| Q |
309 |
tgttgtttattccctgtattaagagcacaattttaattcttgagtgaagctcagaatacaagtttatgtagtgctgaatctgtgacatattc |
400 |
Q |
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| T |
52559258 |
tgttgtttattccctgtattaagagcacaattttaattcttgagcgaagctcagaatacaagtttatgtagtgttgaacctgtgacatattc |
52559167 |
T |
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