View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17206_low_3 (Length: 385)
Name: NF17206_low_3
Description: NF17206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17206_low_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 33 - 385
Target Start/End: Complemental strand, 40518906 - 40518555
Alignment:
| Q |
33 |
tgtcaactatttgagcaaccgtctatgtaacatcatcccacattttgagattgcggtccttccataaaatctaaaacaaactaacggtatgagttgcaaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
40518906 |
tgtcaactatttgagcaaccgtctatgtaacatcatcccacactttgagattgcggtccttccataaaatccaaa-caaactaacgatatgagttgcaaa |
40518808 |
T |
|
| Q |
133 |
gtctggccgtgagatgttatgactacaaaaagattacttatgaggtcgtaccggttttgttgacaatatgttgaatgttgttctataaaccaattgtaaa |
232 |
Q |
| |
|
||| ||| |||||| ||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518807 |
gtccggc-gtgagacgttctaactacaaaaaaattaattatgaggtcgtaccggttttgttgacaatatgttgaatgttgttctataaaccaattgtaaa |
40518709 |
T |
|
| Q |
233 |
ccaaccttgcattgcaaaaggac-aagtnnnnnnncacatgatccaaatcatcaacagaagaatcacaactaacgcaatttgtagggtattgaatacatt |
331 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518708 |
ccaaccttgcattgcaaaagaactaagtaaaaaaacacatgatccaaatcatcaacagaagaatcacaactaacgcaatttgtagggtattgaatacatt |
40518609 |
T |
|
| Q |
332 |
tatcctacaagtaaactcgtgtgggcaaacaacgacgacacatttgccaaacta |
385 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518608 |
tatcctacaagcaaactcgtgtgggcaaacaacgacgacacatttgccaaacta |
40518555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 41837428 - 41837385
Alignment:
| Q |
290 |
aagaatcacaactaacgcaatttgtagggtattgaatacattta |
333 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
41837428 |
aagaatcacaactaacacaatttgtagggcattgaaaacattta |
41837385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 25984037 - 25983955
Alignment:
| Q |
35 |
tcaactatttgagcaaccgtctatgtaacatcatcccacattttgagattgcggtccttccataaaatctaaaacaaactaac |
117 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||| |||| |||||| ||| ||| |||||||||| || ||||||| ||||| |
|
|
| T |
25984037 |
tcaactacttgagcagttgtctctgtaacatcatctcacactttgaggttgtggtacttccataaactccaaaacaagctaac |
25983955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University