View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17206_low_4 (Length: 333)
Name: NF17206_low_4
Description: NF17206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17206_low_4 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 40464782 - 40464458
Alignment:
| Q |
1 |
atttttggaagaccctactcatatcactctctcactcacacgcgcaaaagctgtttataactttactattgtttcagtgataatttggtatatactatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40464782 |
atttttggaagaccctactcatatcactctctccctcacacgcgcaaaagctgtttataactttactattgtttcagtgataatttgttatatactatgc |
40464683 |
T |
|
| Q |
101 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464682 |
tgcagcttactggtgaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
40464583 |
T |
|
| Q |
201 |
accaggttggtacaaccttctttctagctccaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggcacatgtcaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464582 |
accaggttggtacaaccttctttctagctcaaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggcacatgtcaaaag |
40464483 |
T |
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| Q |
301 |
aattaccgatcgaactagcgagtct |
325 |
Q |
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| T |
40464482 |
aattaccggtcaaactagcgagtct |
40464458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 77694 - 77801
Alignment:
| Q |
101 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
200 |
Q |
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| T |
77694 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
77793 |
T |
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| Q |
201 |
accaggtt |
208 |
Q |
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|||||||| |
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| T |
77794 |
accaggtt |
77801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 40888590 - 40888483
Alignment:
| Q |
101 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
200 |
Q |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
40888590 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
40888491 |
T |
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| Q |
201 |
accaggtt |
208 |
Q |
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| T |
40888490 |
accaggtt |
40888483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 21626639 - 21626732
Alignment:
| Q |
118 |
acagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggt |
211 |
Q |
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| T |
21626639 |
acagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggttggt |
21626732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 28270827 - 28270720
Alignment:
| Q |
101 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
200 |
Q |
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||||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| || || ||| ||| |||| ||||| ||||| || || |
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| T |
28270827 |
tgcagctaactggtgaaacggtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgcctt |
28270728 |
T |
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| Q |
201 |
accaggtt |
208 |
Q |
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|||||||| |
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| T |
28270727 |
accaggtt |
28270720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 25026961 - 25026912
Alignment:
| Q |
127 |
gaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctag |
176 |
Q |
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||||||| ||| ||| |||| |||||||||||||||||||||||| |||| |
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| T |
25026961 |
gaagtgagagctgtatctgatatgcatcaaaggaaagctgaaatggctag |
25026912 |
T |
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