View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17206_low_5 (Length: 329)

Name: NF17206_low_5
Description: NF17206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17206_low_5
NF17206_low_5
[»] chr3 (7 HSPs)
chr3 (22-329)||(46968899-46969206)
chr3 (193-242)||(17262293-17262342)
chr3 (128-160)||(3461780-3461812)
chr3 (128-238)||(28951873-28951985)
chr3 (132-160)||(4045690-4045718)
chr3 (128-160)||(6951846-6951878)
chr3 (128-160)||(24890080-24890112)
[»] chr6 (5 HSPs)
chr6 (128-240)||(4844150-4844264)
chr6 (128-161)||(9422840-9422873)
chr6 (131-160)||(17176159-17176188)
chr6 (128-160)||(20858439-20858471)
chr6 (128-160)||(31639148-31639180)
[»] chr2 (4 HSPs)
chr2 (170-242)||(6282285-6282358)
chr2 (184-242)||(32944126-32944185)
chr2 (128-160)||(19352873-19352905)
chr2 (128-160)||(40471160-40471192)
[»] chr4 (5 HSPs)
chr4 (128-160)||(17431384-17431416)
chr4 (132-161)||(53621211-53621240)
chr4 (128-160)||(56916-56948)
chr4 (128-160)||(12585615-12585647)
chr4 (128-160)||(42432015-42432047)
[»] chr1 (6 HSPs)
chr1 (128-160)||(47141862-47141894)
chr1 (128-220)||(2903021-2903115)
chr1 (202-242)||(1576093-1576133)
chr1 (128-160)||(3140365-3140397)
chr1 (128-160)||(4605898-4605930)
chr1 (128-160)||(18179335-18179367)
[»] chr8 (7 HSPs)
chr8 (131-161)||(32940369-32940399)
chr8 (131-242)||(216119-216232)
chr8 (131-242)||(692679-692792)
chr8 (131-242)||(696888-697001)
chr8 (131-242)||(729742-729855)
chr8 (131-242)||(853637-853750)
chr8 (128-160)||(18577120-18577152)
[»] chr5 (3 HSPs)
chr5 (131-161)||(17178277-17178307)
chr5 (131-160)||(35813298-35813327)
chr5 (132-160)||(41405144-41405172)
[»] chr7 (4 HSPs)
chr7 (131-160)||(3246542-3246571)
chr7 (131-242)||(7392278-7392391)
chr7 (131-160)||(10020525-10020554)
chr7 (128-161)||(38032910-38032943)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 46968899 - 46969206
Alignment:
Q  22 tggctacatgtgcaatccaaccgtaaatataaactgttatcccgtgtatatatttttctcaaaaatacctctagcgaaacagaatcttagtctacctgag 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||     
T  46968899 tggctacatgtgcaatccaacagtaaatataaactgttatcccgtgtatatatttttctcaaaaatacctctagcgatgcagaatcttagtctacctgaa 46968998  T
Q  122 cttaattaactcagttgacagggacatgcattgttatataagaggttagggttggaaccacaaacacctcattattctcattgaaaaatgtgaattctaa 221  Q
    ||||||||||||||||| ||| |||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  46968999 cttaattaactcagttggcagagacatgcattgttatataaggggatagggttgaaaccacaaacacctcactattctcattgaaaaatgtgaattctaa 46969098  T
Q  222 tcattaatctacttgacaaaagnnnnnnnntatcacaaaaacatcataattcttcgaccatgtaatcaacatgattctgaatccttttaaaatattattg 321  Q
     |||||||||||||||||||||        |||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46969099 ccattaatctacttgacaaaagaaaaaaaatatcacaataacatcgtaattcttcgaccatgtaatcaacatgattttgaatccttttaaaatattattg 46969198  T
Q  322 actttcac 329  Q
    ||||||||    
T  46969199 actttcac 46969206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 17262293 - 17262342
Alignment:
Q  193 ttattctcattgaaaaatgtgaattctaatcattaatctacttgacaaaa 242  Q
    |||||| | |||||||| |||||||||||||||||| |||||||||||||    
T  17262293 ttattcaccttgaaaaaggtgaattctaatcattaaactacttgacaaaa 17262342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 3461812 - 3461780
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||||||||||    
T  3461812 taactcagttgacagggacatgcattgttatat 3461780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 28951873 - 28951985
Alignment:
Q  128 taactcagttgacagggacatgcattgttatata-agaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcat 225  Q
    ||||||||||| |||  ||||||||| ||||||  || ||| |||||| ||||| | |||||| || |||||| | |||||||||||||||||||| |||    
T  28951873 taactcagttggcagatacatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttgaaaaatgtgaattctaaccat 28951972  T
Q  226 taatctacttgac 238  Q
    |||  ||||||||    
T  28951973 taagttacttgac 28951985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 4045718 - 4045690
Alignment:
Q  132 tcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||||||    
T  4045718 tcagttgacagggacatgcattgttatat 4045690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 6951878 - 6951846
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||| ||||||    
T  6951878 taactcagttgacagggacatgcattattatat 6951846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 24890080 - 24890112
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||| ||||||||||||||||||    
T  24890080 taactcagttgacaaggacatgcattgttatat 24890112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 4844150 - 4844264
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcat 225  Q
    ||||||||||| |||||||||||||||||||||  || |||  |||||  |||| || |||||||| |||||| | |||||||| ||||||||||| ||     
T  4844150 taactcagttggcagggacatgcattgttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaagtgaattctaaccac 4844249  T
Q  226 taatctacttgacaa 240  Q
    ||  |||||||||||    
T  4844250 tagactacttgacaa 4844264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 9422840 - 9422873
Alignment:
Q  128 taactcagttgacagggacatgcattgttatata 161  Q
    ||||||||||| ||||||||||||||||||||||    
T  9422840 taactcagttggcagggacatgcattgttatata 9422873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Original strand, 17176159 - 17176188
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||||||||||||||||||    
T  17176159 ctcagttgacagggacatgcattgttatat 17176188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 20858471 - 20858439
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||| |||||||||||||||||||||    
T  20858471 taactcagttggcagggacatgcattgttatat 20858439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 31639148 - 31639180
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||| ||||||||||||    
T  31639148 taactcagttgacagggacacgcattgttatat 31639180  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 6282285 - 6282358
Alignment:
Q  170 gggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaatctacttgacaaaa 242  Q
    ||||| ||||| ||||||||||| |||||| | |||||||||||||||||||| || |||  ||||||||||||    
T  6282285 gggtttgaaccccaaacacctcacttattcactttgaaaaatgtgaattctaaccactaaattacttgacaaaa 6282358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 32944126 - 32944185
Alignment:
Q  184 aacacctca-ttattctcattgaaaaatgtgaattctaatcattaatctacttgacaaaa 242  Q
    ||||||||| |||||| | |||||||| ||||||||||||||||||  ||||||||||||    
T  32944126 aacacctcacttattcaccttgaaaaaagtgaattctaatcattaaattacttgacaaaa 32944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 19352873 - 19352905
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||| |||||||||||||||||    
T  19352873 taactcagttgacagagacatgcattgttatat 19352905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 40471160 - 40471192
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||| ||||||    
T  40471160 taactcagttgacagggacatgcattattatat 40471192  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 17431384 - 17431416
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||||||||||    
T  17431384 taactcagttgacagggacatgcattgttatat 17431416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 53621211 - 53621240
Alignment:
Q  132 tcagttgacagggacatgcattgttatata 161  Q
    ||||||||||||||||||||||||||||||    
T  53621211 tcagttgacagggacatgcattgttatata 53621240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 56948 - 56916
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||| |||||||||||||||||||||    
T  56948 taactcagttggcagggacatgcattgttatat 56916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 12585647 - 12585615
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||| |||||||||||||||||||||    
T  12585647 taactcagttggcagggacatgcattgttatat 12585615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 42432015 - 42432047
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||| |||||||||||||||||||||    
T  42432015 taactcagttggcagggacatgcattgttatat 42432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 47141894 - 47141862
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||||||||||    
T  47141894 taactcagttgacagggacatgcattgttatat 47141862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 2903115 - 2903021
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattcta 220  Q
    ||||||||||| |||||||||||||||||||||  ||||||  ||||| ||||| | |||||| || |||||| | |||||||| | ||||||||    
T  2903115 taactcagttgccagggacatgcattgttatatgcagaggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaattcta 2903021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 1576133 - 1576093
Alignment:
Q  202 ttgaaaaatgtgaattctaatcattaatctacttgacaaaa 242  Q
    |||||||| |||||||||||||| ||| |||||||||||||    
T  1576133 ttgaaaaaagtgaattctaatcactaaactacttgacaaaa 1576093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 3140365 - 3140397
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||| |||||||||||||||||    
T  3140365 taactcagttgacagagacatgcattgttatat 3140397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 4605930 - 4605898
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||| |||||||||||||||||    
T  4605930 taactcagttgacagagacatgcattgttatat 4605898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 18179335 - 18179367
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    ||||||||||| |||||||||||||||||||||    
T  18179335 taactcagttggcagggacatgcattgttatat 18179367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 32940399 - 32940369
Alignment:
Q  131 ctcagttgacagggacatgcattgttatata 161  Q
    |||||||||||||||||||||||||||||||    
T  32940399 ctcagttgacagggacatgcattgttatata 32940369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 216232 - 216119
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaa 228  Q
    |||||||| ||||||||| |||||||||||  |||||| |||||| ||| |||  |||||||| |||||| | |||||||| |||||| |||| || ||     
T  216232 ctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactag 216133  T
Q  229 tctacttgacaaaa 242  Q
     |||| ||||||||    
T  216132 actacctgacaaaa 216119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 692792 - 692679
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaa 228  Q
    |||||||| ||||||||| |||||||||||  |||||| |||||| ||| |||  |||||||| |||||| | |||||||| |||||| |||| || ||     
T  692792 ctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactag 692693  T
Q  229 tctacttgacaaaa 242  Q
     |||| ||||||||    
T  692692 actacctgacaaaa 692679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 697001 - 696888
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaa 228  Q
    |||||||| ||||||||| |||||||||||  |||||| |||||| ||| |||  |||||||| |||||| | |||||||| |||||| |||| || ||     
T  697001 ctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactag 696902  T
Q  229 tctacttgacaaaa 242  Q
     |||| ||||||||    
T  696901 actacctgacaaaa 696888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 729855 - 729742
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaa 228  Q
    |||||||| ||||||||| |||||||||||  |||||| |||||| ||| |||  |||||||| |||||| | |||||||| |||||| |||| || ||     
T  729855 ctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactag 729756  T
Q  229 tctacttgacaaaa 242  Q
     |||| ||||||||    
T  729755 actacctgacaaaa 729742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 853750 - 853637
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat-aagaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaa 228  Q
    |||||||| ||||||||| |||||||||||  |||||| |||||| ||| |||  |||||||| |||||| | |||||||| |||||| |||| || ||     
T  853750 ctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactag 853651  T
Q  229 tctacttgacaaaa 242  Q
     |||| ||||||||    
T  853650 actacctgacaaaa 853637  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 18577120 - 18577152
Alignment:
Q  128 taactcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||| ||||||||||    
T  18577120 taactcagttgacagggacatgtattgttatat 18577152  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 17178307 - 17178277
Alignment:
Q  131 ctcagttgacagggacatgcattgttatata 161  Q
    |||||||||||||||||||||||||||||||    
T  17178307 ctcagttgacagggacatgcattgttatata 17178277  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 35813327 - 35813298
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||||||||||||||||||    
T  35813327 ctcagttgacagggacatgcattgttatat 35813298  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 41405172 - 41405144
Alignment:
Q  132 tcagttgacagggacatgcattgttatat 160  Q
    |||||||||||||||||||||||||||||    
T  41405172 tcagttgacagggacatgcattgttatat 41405144  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 3246571 - 3246542
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||||||||||||||||||    
T  3246571 ctcagttgacagggacatgcattgttatat 3246542  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 7392391 - 7392278
Alignment:
Q  131 ctcagttgacagggacatgcattgttatata-agaggttagggttggaaccacaaacacctca-ttattctcattgaaaaatgtgaattctaatcattaa 228  Q
    |||| ||| |||| ||||||||||||||||  ||||||| ||||| ||||| | |||||| || |||||| | ||||||||| |||||| ||  || |||    
T  7392391 ctcaattggcaggaacatgcattgttatatgcagaggttggggtttgaaccccgaacaccccacttattcaccttgaaaaatatgaattatagccactaa 7392292  T
Q  229 tctacttgacaaaa 242  Q
     |||||||||||||    
T  7392291 actacttgacaaaa 7392278  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 10020554 - 10020525
Alignment:
Q  131 ctcagttgacagggacatgcattgttatat 160  Q
    ||||||||||||||||||||||||||||||    
T  10020554 ctcagttgacagggacatgcattgttatat 10020525  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 38032943 - 38032910
Alignment:
Q  128 taactcagttgacagggacatgcattgttatata 161  Q
    ||||||||||| ||||||||||||||||||||||    
T  38032943 taactcagttggcagggacatgcattgttatata 38032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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