View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17206_low_8 (Length: 229)
Name: NF17206_low_8
Description: NF17206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17206_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 40770917 - 40770710
Alignment:
| Q |
14 |
atgaaaaaattgtgcaaatattgttataagtggaagtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatgga |
113 |
Q |
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| T |
40770917 |
atgaaaaaattgtgcaaatattgttataagtcgaagtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatgga |
40770818 |
T |
|
| Q |
114 |
gctatgctgttattgactgatcttagatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgatt |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40770817 |
gctatgctgttattgactgatctttgatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgatt |
40770718 |
T |
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| Q |
214 |
gatgatgt |
221 |
Q |
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|||||||| |
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| T |
40770717 |
gatgatgt |
40770710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8332165 - 8332369
Alignment:
| Q |
17 |
aaaaaattgtgcaaatattgttataagtggaagtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagct |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8332165 |
aaaaaattgtgcaaatattgttataagtcgaagtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagct |
8332264 |
T |
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| Q |
117 |
atgctgttattgactgatcttagatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgattgat |
216 |
Q |
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| T |
8332265 |
atgctgttattgactgatctttgatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgattgat |
8332364 |
T |
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| Q |
217 |
gatgt |
221 |
Q |
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||||| |
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| T |
8332365 |
gatgt |
8332369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 17020657 - 17020528
Alignment:
| Q |
54 |
aatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggtagtt |
153 |
Q |
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|||||||||||||| ||||| ||||| | |||| ||| | |||||||||||| ||||||||||||||| ||| ||||||||| ||||| |||||||| |
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| T |
17020657 |
aatacctctgtgcaaactgcaatgaagaaaggtcgattagtttcagaagtcattaatggagctatgctgcaattaactgatctttgattttgtggtagtt |
17020558 |
T |
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| Q |
154 |
cacatattgatgaagaacaggattccattg |
183 |
Q |
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| T |
17020557 |
cactaattgatgaagagcttgattccattg |
17020528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 119338 - 119473
Alignment:
| Q |
48 |
agtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttg |
147 |
Q |
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|||||||||||||||||||| ||||| | ||| | |||| ||| | |||||||||||| ||||||||||||||| ||| ||||||||| ||||| || |
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| T |
119338 |
agtagtaatacctctgtgcaaactgcaacgaagaaaggtcgattagtttcagaagtcattaatggagctatgctgcaattaactgatctttgattttgtg |
119437 |
T |
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| Q |
148 |
gtagttcacatattgatgaagaacaggattccattg |
183 |
Q |
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||||||||| |||||||||||| |||||||||| |
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| T |
119438 |
gtagttcactgattgatgaagaaattgattccattg |
119473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 19777307 - 19777177
Alignment:
| Q |
51 |
agtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggta |
150 |
Q |
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||||||||||||||||| | ||| |||||| |||||||||| || ||||| ||||| ||||||||||||||| ||| |||||| | |||| ||| ||| |
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| T |
19777307 |
agtaatacctctgtgcagattgcaatgaaaaatggtctattagactcagatgtcatcaatggagctatgctgcaatttactgatggttgattggtttgta |
19777208 |
T |
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| Q |
151 |
gttcacatattgatgaagaacaggattccat |
181 |
Q |
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||||| ||| |||||||||| ||| ||||| |
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| T |
19777207 |
tttcacttatggatgaagaactggactccat |
19777177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 143996 - 144125
Alignment:
| Q |
55 |
atacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggtagttc |
154 |
Q |
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||||||||||||| ||||| ||||| | |||||||| |||||||||||| | ||||||||||||| ||| ||||||||| ||||| ||||||||| |
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| T |
143996 |
atacctctgtgcaaactgcaatgaagaaaggtctattactttcagaagtcatcattggagctatgctgcaattaactgatctttgattttgtggtagttc |
144095 |
T |
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| Q |
155 |
acatattgatgaagaacaggattccattgt |
184 |
Q |
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|| ||| ||||||||| ||||||||||| |
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| T |
144096 |
actaattaatgaagaacttgattccattgt |
144125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 18059703 - 18059832
Alignment:
| Q |
55 |
atacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggtagttc |
154 |
Q |
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||||||||||||| ||||| ||||| | |||||||| |||||||||||| | |||||||||||| ||| ||||||||| ||||| ||||||||| |
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| T |
18059703 |
atacctctgtgcaaactgcaatgaagaaaggtctattactttcagaagtcatcattggagctatgctacaattaactgatctttgattttgtggtagttc |
18059802 |
T |
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| Q |
155 |
acatattgatgaagaacaggattccattgt |
184 |
Q |
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|| ||||||||||||| ||||||||||| |
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| T |
18059803 |
actaattgatgaagaacttgattccattgt |
18059832 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 4255183 - 4255255
Alignment:
| Q |
50 |
tagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctg |
122 |
Q |
| |
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|||||||||||||||||| || |||| |||| | |||||||| |||||| ||||| ||||||||| ||||| |
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| T |
4255183 |
tagtaatacctctgtgcaaacagctaagaaagaaggtctattggattcaattgtcatcaatggagctctgctg |
4255255 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 21898153 - 21898225
Alignment:
| Q |
50 |
tagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctg |
122 |
Q |
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|||||||||||||||||| || |||| |||| | |||||||| |||||| ||||| ||||||||| ||||| |
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| T |
21898153 |
tagtaatacctctgtgcaaacagctaagaaagaaggtctattggattcaattgtcatcaatggagctctgctg |
21898225 |
T |
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