View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17207_high_1 (Length: 397)
Name: NF17207_high_1
Description: NF17207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17207_high_1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 397
Target Start/End: Original strand, 46265284 - 46265678
Alignment:
| Q |
5 |
agatatatatttcaatttgacactgtggatatgcctggatagcaacnnnnnnnnnn--tattgatgtttaacttaattatttctttatgtcctacttgtc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46265284 |
agatatatatttcaatttgacactgtggatatgcctgaatagcaacaaaaaaaaaaaatattgatgtttaacttaattatttctttatgtcctacttgtc |
46265383 |
T |
|
| Q |
103 |
aaatattggttctgatcaaagatttctcttccaagttcaatatatatttaaggatcagacattacaaatttattctctcttctactgtagtttacattga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46265384 |
aaatattggttctgatcaaagatttctcttccaagttcaatatatatttaaggatcagacataacaaatttattctctcttctactgtagtttacattga |
46265483 |
T |
|
| Q |
203 |
ctacaatgttgccattaatttctagcgaaattgtcagttgagtcattaactcgtgaatgttttacgttaaatggctttcttgttcatactcaaattctat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46265484 |
ctacaatgttgccattaatttctagcgaaattgtcagttgagtcattaactcgtgaatgttttaggttaaatggctttcttgttcatactcaaattctat |
46265583 |
T |
|
| Q |
303 |
ttcagacaatttgtagaatgcattcaatccaaatggtcagattacaaattgaacatttaaattaagttgcaccaagagtatgaatgaaattcacc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46265584 |
ttcagacaatttgtagaatgcattcaatccaaatggtcagatagcaaattgaacatttaaattaagttgcaccaaaagtatgaatgaaattcacc |
46265678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University