View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17207_low_3 (Length: 363)
Name: NF17207_low_3
Description: NF17207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17207_low_3 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 2160263 - 2160599
Alignment:
| Q |
1 |
actttccaattagtcttaaatcttaatcatcaaaatattaaatttcttaagacacaaaaagcgatgagtaaagggagttagattctatggagggcaatct |
100 |
Q |
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| T |
2160263 |
actttccaattagtcttaaatcttaatcatcaaaatattaaatttcttaagacacaaaaagcgatgagtaaagggagttagattctatggagggcaatct |
2160362 |
T |
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| Q |
101 |
taacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagataatgaagtacca |
200 |
Q |
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| T |
2160363 |
taacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagataatgaagcacca |
2160462 |
T |
|
| Q |
201 |
aaaactcaaaatttggacctcaaaatatcgaggttctgtgttgttggtctttttgcacaccatcataaccggctctgattctatgtagccgggataccct |
300 |
Q |
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| T |
2160463 |
aaaactcaaaatttggacctcaaaatatcgaggttctgtgttgttggtctttttgcacaccatcataaccggctctgattctatgtagccgggataccct |
2160562 |
T |
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| Q |
301 |
caattcacgcactcagtacgtcggtggtcctttcatc |
337 |
Q |
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| T |
2160563 |
caattcacgcactcagtacgtcggtggtcctttcatc |
2160599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 333
Target Start/End: Original strand, 2165638 - 2165888
Alignment:
| Q |
97 |
atcttaacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagata------- |
189 |
Q |
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| T |
2165638 |
atcttaacactcgagaggtcatgttctaattttaaaaagttgacca-taataaaaggaaagtgttgttggaccctagaaattaattgaagatattatata |
2165736 |
T |
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| Q |
190 |
--------atgaagtaccaaaaactcaaaatttggacctcaaaatatcgaggttctgtgttgttggtctttttgcacaccatcataaccggctctgattc |
281 |
Q |
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| T |
2165737 |
tttaccaaatgaagcaccaaaaactcaaaatttggacctcaaaatatcgaggtcatgtgttgttagtcttcttgcacaccatcataatcagctctgatta |
2165836 |
T |
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| Q |
282 |
tatgtagccgggataccctcaattcacgcactcagtacgtcggtggtccttt |
333 |
Q |
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| T |
2165837 |
tatgtagttgggataccctcaattcagacattcagtatgtcggtggtccttt |
2165888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 333
Target Start/End: Original strand, 2177271 - 2177521
Alignment:
| Q |
97 |
atcttaacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagata------- |
189 |
Q |
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| T |
2177271 |
atcttaacactcgagaggtcatgttctaattttaaaaagttgacca-taataaaaggaaagtgttgttggaccctagaaattaattgaagatattatata |
2177369 |
T |
|
| Q |
190 |
--------atgaagtaccaaaaactcaaaatttggacctcaaaatatcgaggttctgtgttgttggtctttttgcacaccatcataaccggctctgattc |
281 |
Q |
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| T |
2177370 |
tttaccaaatgaagcaccaaaaactcaaaatttggacctcaaaatatcgaggtcatgtgttgttagtcttcttgcacaccatcataatcagctctgatta |
2177469 |
T |
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| Q |
282 |
tatgtagccgggataccctcaattcacgcactcagtacgtcggtggtccttt |
333 |
Q |
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| T |
2177470 |
tatgtagttgggataccctcaattcagacattcagtatgtcggtggtccttt |
2177521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 97 - 333
Target Start/End: Complemental strand, 16771 - 16522
Alignment:
| Q |
97 |
atcttaacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagata------- |
189 |
Q |
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||||||||||| ||||||||||||||||||||||||| | |||| |||| ||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
16771 |
atcttaacactcgagaggtcatgttctaattttaaaaagttgacca-taataaaaggaaagtgttgttggaccctagaaattaattgaagatattatata |
16673 |
T |
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| Q |
190 |
-------atgaagtaccaaaaactcaaaatttggacctcaaaatatcgaggttctgtgttgttggtctttttgcacaccatcataaccggctctgattct |
282 |
Q |
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| T |
16672 |
ttaccaaatgaagcaccaaaaactcaaaatttggacctcaaaatatcgaggtcatgtgttgttagtcttcttgcacaccatcataatcagctctgattat |
16573 |
T |
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| Q |
283 |
atgtagccgggataccctcaattcacgcactcagtacgtcggtggtccttt |
333 |
Q |
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| T |
16572 |
atgtagttgggataccctcaattcagacattcagtatgtcggtggtccttt |
16522 |
T |
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