View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17208_high_2 (Length: 302)
Name: NF17208_high_2
Description: NF17208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17208_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 6060774 - 6061055
Alignment:
| Q |
6 |
ggagcagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacccgat |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6060774 |
ggagaagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacctgat |
6060873 |
T |
|
| Q |
106 |
gaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataacc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060874 |
gaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataacc |
6060973 |
T |
|
| Q |
206 |
attttgacttttgatgaatttgcatggagcaatcaggaatagaagaagtcgctgtaatctaggtgttcttgaagaatcaagt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060974 |
attttgacttttgatgaatttgcatggagcaaacaggaatagaagaagtcgctgtaatctaggtgttcttgaagaatcaagt |
6061055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 6047059 - 6047135
Alignment:
| Q |
121 |
gggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
197 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||| ||| ||||||||| || |||||||||||||||||| |
|
|
| T |
6047059 |
gggatctcagacatagaccttttatctgacaatgattatgactatgatgaattcttaggtgggagtgaattttctga |
6047135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 6043725 - 6043816
Alignment:
| Q |
103 |
gatgaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
197 |
Q |
| |
|
|||||||| || ||| |||||||||| |||| || ||||| |||||| |||||| ||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
6043725 |
gatgaagactacccatctgggatctcagacatggatcttttatctgacgatgattatgaatatgacgaattctc---tgggagtgaattttctga |
6043816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 6132511 - 6132428
Alignment:
| Q |
11 |
agagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatg |
94 |
Q |
| |
|
|||||| || ||||||| ||||||||||| ||||||||||||| || | ||||| ||| |||||||||| | || |||||||| |
|
|
| T |
6132511 |
agagatttatagaacaagtcaagtatttacggcttccatatgatgccactgatgattatccatttcaagcggcatttgattatg |
6132428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 6053730 - 6053829
Alignment:
| Q |
14 |
gatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagc---tgaatgtgattatggatcacccgatgaaga |
110 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||| |||| || | ||||||||| |||||||| | ||||||||||||||||||||| | |||||| |
|
|
| T |
6053730 |
gatgtaaagagcagatcaagtattttcggcttccacatgacgccactgatgactatccatttcaaacatctgaatgtgattatggatcacctgttgaaga |
6053829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University