View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17208_low_1 (Length: 453)
Name: NF17208_low_1
Description: NF17208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17208_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 34986240 - 34985817
Alignment:
| Q |
15 |
caaaggccaaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaaaa |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986240 |
caaaagccaaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaaaa |
34986141 |
T |
|
| Q |
115 |
catcaaaactgaactattatactccagtttttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttccatcgggcattcctt |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34986140 |
catcaaaactgaactattatactccattttttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttggagtttccatcgggcattcctt |
34986041 |
T |
|
| Q |
215 |
caatcaaacagcctgaaggtctcttatgaaaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaa |
314 |
Q |
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||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986040 |
caatcaaacagccagaaggtcttttatgaaaattgttagaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaa |
34985941 |
T |
|
| Q |
315 |
ttgtttgctatatcttgcaaaaacacacttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaatataaacaaaaggatgta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34985940 |
ttgtttgctatatcttgcaaaaacacacttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaatataaataaaaggatgta |
34985841 |
T |
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| Q |
415 |
acattatgttaattttgaaattct |
438 |
Q |
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| T |
34985840 |
acattatgttaattttgaaattct |
34985817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 144 - 398
Target Start/End: Complemental strand, 34994475 - 34994221
Alignment:
| Q |
144 |
tttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttccatcgggcattccttcaatcaaacagcctgaaggtctcttatga |
243 |
Q |
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|||| |||||| |||| |||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
34994475 |
tttgcttataaagaaaattaaagggagtatatgtatgtaaagaaccttggagtttccattgggcattcctataatcaaacagcctgaaggtcttttatga |
34994376 |
T |
|
| Q |
244 |
aaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaattgtttgctatatcttgcaaaaacacact |
343 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
34994375 |
aaattgtttgagaaagaaggtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtaaattgtttgctatatcttgcaaacacacact |
34994276 |
T |
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| Q |
344 |
tccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaata |
398 |
Q |
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|||||||||||||| |||||| || |||| |||||||||||||||||||||||| |
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| T |
34994275 |
cccgagttggtataaaaggactaggcaaataaaattctgcactcatctgcaaata |
34994221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 34994615 - 34994507
Alignment:
| Q |
15 |
caaaggccaaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaat--taa |
112 |
Q |
| |
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|||| |||||| | |||||||| |||| | |||||||| || |||||| ||||| ||||||| | || ||||||| ||||||||||||| ||||| ||| |
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| T |
34994615 |
caaaagccaaaccagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactacatgctccacccatataacctaatgtaattataa |
34994516 |
T |
|
| Q |
113 |
aacatcaaa |
121 |
Q |
| |
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||||||||| |
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| T |
34994515 |
aacatcaaa |
34994507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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