View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_high_1 (Length: 846)

Name: NF17209_high_1
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_high_1
NF17209_high_1
[»] chr1 (4 HSPs)
chr1 (1-829)||(47799574-47800401)
chr1 (62-152)||(48755583-48755673)
chr1 (164-309)||(11326829-11326975)
chr1 (164-309)||(11484850-11484996)
[»] chr7 (4 HSPs)
chr7 (550-745)||(1528249-1528444)
chr7 (569-637)||(20276780-20276848)
chr7 (625-719)||(4683126-4683220)
chr7 (776-829)||(1528158-1528211)
[»] chr2 (5 HSPs)
chr2 (625-761)||(31481859-31481995)
chr2 (468-625)||(31481678-31481837)
chr2 (625-719)||(31332149-31332243)
chr2 (625-719)||(31338879-31338973)
chr2 (625-696)||(30268986-30269057)
[»] chr6 (3 HSPs)
chr6 (191-262)||(28730916-28730988)
chr6 (191-262)||(28735607-28735679)
chr6 (625-696)||(30824885-30824956)
[»] chr3 (1 HSPs)
chr3 (625-719)||(7404127-7404221)
[»] chr8 (6 HSPs)
chr8 (625-760)||(27813789-27813923)
chr8 (625-719)||(25640939-25641033)
chr8 (505-633)||(4742895-4743023)
chr8 (777-827)||(4743941-4743991)
chr8 (780-822)||(4756148-4756190)
chr8 (778-815)||(39195516-39195553)
[»] chr4 (2 HSPs)
chr4 (582-761)||(4889228-4889405)
chr4 (625-696)||(53302312-53302383)


Alignment Details
Target: chr1 (Bit Score: 777; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 1 - 829
Target Start/End: Complemental strand, 47800401 - 47799574
Alignment:
Q  1 acagttgtttcaaggttgtcgctcataactatgataacatatagttaactccttctcggcggttaacctttgaattttatcaaataaacaaatagattca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800401 acagttgtttcaaggctgtcgctcataactatgataacatatagttaactccttctcggcggttaacctttgaattttatcaaataaacaaatagattca 47800302  T
Q  101 gacctgcaaacagataaccttcagacattcatatcgttatctcttgattccatccactacacaatcatctctatacctctgattcgtgtaagaaaagtcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800301 gacctgcaaacagataaccttcagacattcatatcgttatctcttgattccatccactacacaatcatctctatacctctgattcgtgtaagaaaagtcc 47800202  T
Q  201 ttaacttaggtaaattattgcttgtcttagattgcattttgtaaaggcacgaggaataatagacaatgaaatatcaaaaccaaccgaaatagaaaacaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800201 ttaacttaggtaaattattgcttgtcttagattgcattttg-aaaggcacgaggaataatagacaatgaaatatcaaaaccaaccgaaatagaaaacaca 47800103  T
Q  301 acaaaccattagaattttgtttgatgagtgagttgaatttgcactgaatttttgagcctacagcagtagtaatattagaagtgcatcatatacttcaaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800102 acaaaccattagaattttgtttgatgagtgagttgaatttgcactgaatttttgagcctacagcagtagtaatattagaagtgcatcatatacttcaaaa 47800003  T
Q  401 tgtaaaatgcataactacttgcactagnnnnnnnnttatggctcacctcatttaactttatctataaccaatatagttgccttcaagtgcaatggcacca 500  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800002 tgtaaaatgcataactacttgcactagaaaaaaaaatatggctcacctcatttaactttatctataaccaatatagttgccttcaagtgcaatggcacca 47799903  T
Q  501 caataaaatcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaaca 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799902 caataaaatcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaaca 47799803  T
Q  601 ggaacgtgaccggcttctgcaccattcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaact 700  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799802 ggaacgtgactggcttctgcaccattcaaccctaagttttcaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaact 47799703  T
Q  701 tctattcgttttgcagaattcaaagacctttaacaagcaaaggtgcaggacgatcacattagtcgaatccaaaaattggttgaagcatttgatcaaacag 800  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799702 tctattcgttttgcagaattcaaagacctttaacaagcaaaggttcaggacgatcacattagtcgaatccaaaaattggttgaagcatttgatcaaacag 47799603  T
Q  801 aaagcaagcattgtacgataaattttggt 829  Q
    |||||||||||||||||||||||||||||    
T  47799602 aaagcaagcattgtacgataaattttggt 47799574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 48755673 - 48755583
Alignment:
Q  62 gttaacctttgaattttatcaaataaacaaatagattcagacctgcaaacagataaccttcagacattcatatcgttatctcttgattcca 152  Q
    |||||| |||| ||||||||||| ||  |||||| |||||||||||||| ||||||  ||||||| ||| || | ||||||||||||||||    
T  48755673 gttaacttttgcattttatcaaacaagtaaatagtttcagacctgcaaatagataagattcagaccttcctacctttatctcttgattcca 48755583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 11326829 - 11326975
Alignment:
Q  164 atcatctctatacctctgattcgtgtaagaaaagtcc-ttaacttaggtaaattattgcttgtcttagattgcattttgtaaaggcacgaggaataatag 262  Q
    ||||| |||||||||||||||| ||  ||||| |||| ||| ||||||| ||| |||| || ||||||||||||| | || ||||   ||||||| ||||    
T  11326829 atcatatctatacctctgattcatgagagaaatgtcctttaccttaggttaatcattgattctcttagattgcatatcgtgaaggtttgaggaatcatag 11326928  T
Q  263 acaatgaaatatcaaaaccaaccgaaatagaaaacacaacaaaccat 309  Q
     || | |||||  || | ||||  ||||||||||||||| |||||||    
T  11326929 ccatttaaatacaaagagcaactcaaatagaaaacacaataaaccat 11326975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 11484850 - 11484996
Alignment:
Q  164 atcatctctatacctctgattcgtgtaagaaaagtcc-ttaacttaggtaaattattgcttgtcttagattgcattttgtaaaggcacgaggaataatag 262  Q
    ||||| |||||||||||||||| ||  ||||| |||| ||| ||||||| ||| |||| || ||||||||||||| | || ||||   ||||||| ||||    
T  11484850 atcatatctatacctctgattcatgagagaaatgtcctttaccttaggttaatcattgattctcttagattgcatatcgtgaaggtttgaggaatcatag 11484949  T
Q  263 acaatgaaatatcaaaaccaaccgaaatagaaaacacaacaaaccat 309  Q
     || | |||||  || | ||||  ||||||||||||||| |||||||    
T  11484950 ccatttaaatacaaagagcaactcaaatagaaaacacaataaaccat 11484996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 550 - 745
Target Start/End: Complemental strand, 1528444 - 1528249
Alignment:
Q  550 acaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaacgtgaccggcttctgcaccattcaaccctaagtttccaataattt 649  Q
    |||| |||||||||||||||||||||||| ||| |||| ||||| ||||||||||||| |  ||||||| ||||||||||||||||||||| || |||||    
T  1528444 acagccaccattgtcggtgctggagcagcagtattttgattatgaacaacaggaacgtaaaaggcttctacaccattcaaccctaagtttctaacaattt 1528345  T
Q  650 agttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaattcaaagacctttaacaagcaaaggtg 745  Q
    |||||||   ||||||| ||||| || ||||| |||||| ||||||| | || ||||||||||||| ||| |||| || || ||| ||||||||||    
T  1528344 agttaagaccgaatctataaattacacataattgcattctgaacaaacaattatattcgttttgcataatccaaacactttcaacgagcaaaggtg 1528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 569 - 637
Target Start/End: Complemental strand, 20276848 - 20276780
Alignment:
Q  569 ctggagcagccgtagtttggttatgcacaacaggaacgtgaccggcttctgcaccattcaaccctaagt 637  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20276848 ctggagcagcagtagtttggtcatgcaaaacaggaacgtgaccggcttctgcaccattcaaccctaagt 20276780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 719
Target Start/End: Complemental strand, 4683220 - 4683126
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaat 719  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || |||||||||||||||| ||| | |||| ||| |||||||||||    
T  4683220 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaagaaacaattctgttcattttgcagaat 4683126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 776 - 829
Target Start/End: Complemental strand, 1528211 - 1528158
Alignment:
Q  776 ttggttgaagcatttgatcaaacagaaagcaagcattgtacgataaattttggt 829  Q
    ||||||||||||||| |||||| || ||||||||||| ||| ||||||||||||    
T  1528211 ttggttgaagcattttatcaaaaagtaagcaagcattctaccataaattttggt 1528158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 625 - 761
Target Start/End: Original strand, 31481859 - 31481995
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaattcaaa 724  Q
    ||||||||||||||||||| |||||||||||| | |||||||||| || || ||||||||||||| |||||| | | | |||||||||||||||| ||||    
T  31481859 ttcaaccctaagtttccaacaatttagttaagatcgaatctagaattttcagataatcgcattccaaacaaacaatgccattcgttttgcagaatccaaa 31481958  T
Q  725 gacctttaacaagcaaaggtgcaggacgatcacatta 761  Q
      | ||||||||||| ||| |||| |  |||||||||    
T  31481959 tgcatttaacaagcataggggcagaagaatcacatta 31481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 625
Target Start/End: Original strand, 31481678 - 31481837
Alignment:
Q  468 ccaatatagttgccttcaagtgcaatggcaccaca--ataaaatcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcg 565  Q
    |||||||| |||||| ||| |||| ||||||||||  | |||||||||||||||||  ||||||||  ||||||||||||||||| || ||||| || ||    
T  31481678 ccaatataattgcctacaactgcagtggcaccacataacaaaatcagcctccgaccaatgtacacaatcgtcctctcctctccgagagccaccactgccg 31481777  T
Q  566 gtgctggagcagccgtagtttggttatgcacaacaggaacgtgaccggcttctgcaccat 625  Q
    |  ||||||||||  || ||||||| ||||  |  ||||| ||| ||||||||| |||||    
T  31481778 gcactggagcagcaatattttggttctgcatgatgggaacctgatcggcttctgtaccat 31481837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 719
Target Start/End: Complemental strand, 31332243 - 31332149
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaat 719  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || |||||||||||||||||||| | |||| ||| |||||||||||    
T  31332243 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 31332149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 719
Target Start/End: Complemental strand, 31338973 - 31338879
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaat 719  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || |||||||||||||||||||| | |||| ||| |||||||||||    
T  31338973 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 31338879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 696
Target Start/End: Original strand, 30268986 - 30269057
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaa 696  Q
    ||||||||||||||||||| | |||||||||  | ||||||| || || |  ||||||||||||||||||||    
T  30268986 ttcaaccctaagtttccaaaattttagttaaagtcgaatctaaaatttacggataatcgcattccgaacaaa 30269057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 28730988 - 28730916
Alignment:
Q  191 agaaaagtccttaacttaggtaaattattgctt-gtcttagattgcattttgtaaaggcacgaggaataatag 262  Q
    ||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| ||||    
T  28730988 agaaatgtccttaacttaggtaaatcattgctttgtcttggattgcattttgtaaaggcatgaggaatcatag 28730916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 28735679 - 28735607
Alignment:
Q  191 agaaaagtccttaacttaggtaaattattgctt-gtcttagattgcattttgtaaaggcacgaggaataatag 262  Q
    ||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| ||||    
T  28735679 agaaatgtccttaacttaggtaaatcattgctttgtcttggattgcattttgtaaaggcatgaggaatcatag 28735607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 625 - 696
Target Start/End: Original strand, 30824885 - 30824956
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaa 696  Q
    ||||||||||||||||||| |||||||||||| | ||||||| || || || ||||||||||||||||||||    
T  30824885 ttcaaccctaagtttccaacaatttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaa 30824956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 719
Target Start/End: Complemental strand, 7404221 - 7404127
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaat 719  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || |||||||||||||||||||| | |||| ||| |||||||||||    
T  7404221 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 7404127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 625 - 760
Target Start/End: Original strand, 27813789 - 27813923
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaattcaaa 724  Q
    ||||||||||||||||||| |||||||||||| | ||||||| || || || |||||||||||| ||||||| |  ||  |||||||||||||||  |||    
T  27813789 ttcaaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcgcattctgaacaaacaaatccgttcgttttgcagaatcgaaa 27813887  T
Q  725 gacctttaacaagcaaaggtgcaggacgatcacatt 760  Q
     || |||||  |||| || |||||||  ||||||||    
T  27813888 cacatttaaagagcatagatgcaggagaatcacatt 27813923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 719
Target Start/End: Original strand, 25640939 - 25641033
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaat 719  Q
    ||||| ||||||||||||| | |||||||||| |  |||||| || || || |||||||||||||||||||| | |||| ||| |||||||||||    
T  25640939 ttcaatcctaagtttccaacattttagttaagatctaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 25641033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 505 - 633
Target Start/End: Original strand, 4742895 - 4743023
Alignment:
Q  505 aaaatcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaa 604  Q
    |||||||||||||||||  ||||||||  ||||||||||||||| |  | ||||| ||| |  |||||||||||   ||||||||| ||||| || ||||    
T  4742895 aaaatcagcctccgaccaatgtacacagacgtcctctcctctccaaatgccaccactgttgaagctggagcagcaacagtttggttctgcacgacgggaa 4742994  T
Q  605 cgtgaccggcttctgcaccattcaaccct 633  Q
    | |||  ||||||| ||| || |||||||    
T  4742995 catgattggcttcttcactatccaaccct 4743023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 777 - 827
Target Start/End: Original strand, 4743941 - 4743991
Alignment:
Q  777 tggttgaagcatttgatcaaacagaaagcaagcattgtacgataaattttg 827  Q
    |||||||||||||| |||||||||||| |||||||| ||| ||||| ||||    
T  4743941 tggttgaagcatttcatcaaacagaaaacaagcattataccataaagtttg 4743991  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 780 - 822
Target Start/End: Original strand, 4756148 - 4756190
Alignment:
Q  780 ttgaagcatttgatcaaacagaaagcaagcattgtacgataaa 822  Q
    ||||||||||| |||||||||||| |||||||||||| |||||    
T  4756148 ttgaagcattttatcaaacagaaaacaagcattgtaccataaa 4756190  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 778 - 815
Target Start/End: Original strand, 39195516 - 39195553
Alignment:
Q  778 ggttgaagcatttgatcaaacagaaagcaagcattgta 815  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  39195516 ggttgaagcattttatcaaacagaaaacaagcattgta 39195553  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 761
Target Start/End: Original strand, 4889228 - 4889405
Alignment:
Q  582 agtttggttatgcacaacaggaacgtgaccggcttctgcaccattcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataat 681  Q
    ||||||||| |||||||| |  || |||  ||||||| ||| || ||||||||||||||||| |||| ||||||| |  ||| ||||| ||||| |||||    
T  4889228 agtttggttctgcacaacggcgacatgattggcttcttcac-atccaaccctaagtttccaacaattcagttaagatcaaatatagaatttgcacataat 4889326  T
Q  682 cgcattccgaacaaaaacttctattcgttttgcagaattcaaagacctttaacaagcaaaggtgcaggacgatcacatta 761  Q
    || ||| |||| ||| |  || ||| ||||||| |||| || | | ||||||| |||| ||||||| ||| |||||||||    
T  4889327 cgaatttcgaataaacaggtc-atttgttttgcggaatccatacatctttaacgagcataggtgcacgacaatcacatta 4889405  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 696
Target Start/End: Original strand, 53302312 - 53302383
Alignment:
Q  625 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaa 696  Q
    ||||||||||||||||||  | |||||||||| | ||||||| || || || |||||||||||| |||||||    
T  53302312 ttcaaccctaagtttccacaattttagttaagatcgaatctaaaatttacacataatcgcattctgaacaaa 53302383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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