View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17209_high_10 (Length: 608)
Name: NF17209_high_10
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_10 |
 | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 5 - 424
Target Start/End: Complemental strand, 18391399 - 18390980
Alignment:
| Q |
5 |
agagcatgatgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccatttt |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
18391399 |
agagcatgatgccaaaatgatgatggtaacgatgcacaaagtaacaaagttcgaataatattgttaatggaacgtattttttgtttagattttccatttt |
18391300 |
T |
|
| Q |
105 |
gagaagatgtatatgggcaagacaaac-aaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacact |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18391299 |
gagaagatgtatatgggcaagacaaacgaaaaatgaattcctttggtttcacatgtttttcgaaaattgttatttacaaactcacaaccattgtcacact |
18391200 |
T |
|
| Q |
204 |
gaatggttttaatttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtcca |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18391199 |
aaatggttttaatttccttttgaaattgtgtgtttatgtaagcacagagtttttgaaagcaagagtatacttgagatttttgtgaaatgggaaatgtcca |
18391100 |
T |
|
| Q |
304 |
caaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaa |
403 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18391099 |
-aaaaaatttgagtaatcatacaaaaacaaaacataatatttgtgacctaatgaacttaagaccgaagatgtccatacatcgctatgtaaaatatcaaaa |
18391001 |
T |
|
| Q |
404 |
ggcaacaaactatgattatga |
424 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
18391000 |
ggcaacaagctatgattatga |
18390980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 16658906 - 16659306
Alignment:
| Q |
16 |
ccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttgagaagatgta |
115 |
Q |
| |
|
||||||||||| |||| |||||||||| ||| |||||||||||||| || |||||||| ||||||||||| |||| ||| |||||||||| ||| ||| |
|
|
| T |
16658906 |
ccaaaatgatggaggtagggatgcatgaattaataaagttcgaataatgttattaatggatcgtatttttcgctcagttttaccattttgaggagaggta |
16659005 |
T |
|
| Q |
116 |
tatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaatggttttaa |
215 |
Q |
| |
|
|| || || || | || ||| ||||||||| |||||| | ||||||||||| ||| ||||| || | |||||| ||||| ||||| ||||| | |
|
|
| T |
16659006 |
taaggacatgagagacgaaaggaaattccattaagttcacacatatttcgaaaattattagagacatattctccaccattatcacattgaattgttttga |
16659105 |
T |
|
| Q |
216 |
tttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaaaaaatttga |
315 |
Q |
| |
|
| ||| |||||||||||| || |||||||| || | ||||||||| || || ||||||||||| ||||||||| | ||||||||||||||||| || |
|
|
| T |
16659106 |
tatcccgttgaaattgtgttttgatgtaagctcgcattttttgaaaaataggataaacttgagatttatgtgaaatggggaatgtccacaaaaaattaga |
16659205 |
T |
|
| Q |
316 |
gtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggcaacaaacta |
415 |
Q |
| |
|
|| | ||||||||| | |||||||||||| |||||| || ||||| | ||||||||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
16659206 |
atagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatgtccatacatcactatgtagaatatcaaaaggtaacaaacta |
16659305 |
T |
|
| Q |
416 |
t |
416 |
Q |
| |
|
| |
|
|
| T |
16659306 |
t |
16659306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 19338823 - 19339058
Alignment:
| Q |
7 |
agcatgatgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttga |
106 |
Q |
| |
|
|||||| ||||||||||| | ||||| || || |||| ||| |||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
19338823 |
agcatggtgccaaaatgaagatggtaatgacgcgtgaattaataaagttcgaataatattgttaatggaccatatttttcgttcagatttaccattttga |
19338922 |
T |
|
| Q |
107 |
gaagatgtatatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaa |
206 |
Q |
| |
|
|||||||| || || |||||||||| |||| ||||||||| | |||||| | |||||||||||| |||| ||||| |||| || |||||||| |||| |
|
|
| T |
19338923 |
gaagatgtgtaaggacaagacaaacgaaaaacaattccattagcttcacacatttttcgaaaattactattgacatattcaccgccgttgtcacattgaa |
19339022 |
T |
|
| Q |
207 |
tggttttaatttccttttgaaattgtgtgtttatgt |
242 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
19339023 |
ttgttttaatttctctttgaaattgtgtgttgatgt |
19339058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 53 - 407
Target Start/End: Complemental strand, 45179810 - 45179456
Alignment:
| Q |
53 |
gttcgaataatattgttaatggaacgtatttttcgttcagattttccattttgagaagatgtatatgggcaagacaaacaaaaatgaattccattggttt |
152 |
Q |
| |
|
|||||||| || || || |||||||| ||||||| ||||| | | ||||||||||| ||||| || ||||| || | || |||| ||| || || |||| |
|
|
| T |
45179810 |
gttcgaatgatgttatttatggaacggatttttctttcagctgtaccattttgagatgatgtgtaagggcacgatagacgaaaagaaatgccgtttgttt |
45179711 |
T |
|
| Q |
153 |
cacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaatggttttaatttccttttgaaattgtgtgtttatgtaagcacgaag |
252 |
Q |
| |
|
|||| | ||| |||| | ||||||||| || ||||||||||||||| ||| ||||||||||| ||||||||| ||||| ||| | || | |
|
|
| T |
45179710 |
cacaaaggttttgaaactgaccatttacatattctttaccattgtcacactgtatgtttttaatttcccgttgaaattgagtgttgatggatgcttttaa |
45179611 |
T |
|
| Q |
253 |
tttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacct |
352 |
Q |
| |
|
||||||||| | || || ||||||||||||||||| || |||| |||||||| ||||||| || | ||||||||| || ||||||||||| |||||| |
|
|
| T |
45179610 |
tttttgaaaagaggaataaacttgagatttttgtgagattggaaaagtccacaagtaatttgaatagttatccaaaaaaagcacataatatttgtgacct |
45179511 |
T |
|
| Q |
353 |
aatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggca |
407 |
Q |
| |
|
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
45179510 |
aacgaactcaatacgggagatgtccatacatcactatgtaagatatcaaaaggca |
45179456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 311 - 427
Target Start/End: Original strand, 19339090 - 19339206
Alignment:
| Q |
311 |
tttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggcaaca |
410 |
Q |
| |
|
||||| |||| |||||| || ||||||||||| || ||||| | ||||||||| || ||||| ||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
19339090 |
tttgaataattatccaagaaaagaacataataattgtgaccaactgaacttaaaacaggagaggtccatacatcactatgtaaaatatgaaatggcaaca |
19339189 |
T |
|
| Q |
411 |
aactatgattatgagaa |
427 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
19339190 |
aacttctattatgagaa |
19339206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 1666149 - 1666014
Alignment:
| Q |
272 |
acttgagatttttgtgaaatgagaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggag |
371 |
Q |
| |
|
||||| |||||||||||||| | || |||||||| ||||| || || ||||||||| | || |||||||||| |||||| | | ||| || || |||| |
|
|
| T |
1666149 |
acttgcgatttttgtgaaattgggaaagtccacaagaaattcgaatagtcatccaaatagagcacataatattcatgaccggaagtactcaatacgggag |
1666050 |
T |
|
| Q |
372 |
atgtccatacatcgctatgtaaaatatcaaaaggca |
407 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
1666049 |
atgtccatacatcactatgtaatatatcaaatggca |
1666014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 505
Target Start/End: Complemental strand, 18389226 - 18389154
Alignment:
| Q |
431 |
tgataccatataagaatagaattccttgattgtattgatatatcatttgtgaaaatgtatacaactgtttacaaa |
505 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||| ||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
18389226 |
tgataccatataagagtataattccctgattgtattg--atatcatttgtgaaactatatacaactatttacaaa |
18389154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 36647934 - 36647821
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||| |||||||||| |||| || | ||||| || || ||||||||||| | ||| ||||| | |
|
|
| T |
36647934 |
gaaatgtccacaaaaaattagagtagtcatccacaaacaaaacataatatctatggcccgaagaactcaaaacaggagatgtccaaatatcactatggat |
36647835 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
36647834 |
aatgtcaaatggca |
36647821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 1851498 - 1851385
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| |||| |||||||||| |||| || | ||||| || || ||||||||||| | ||| ||||| | |
|
|
| T |
1851498 |
gaaatgtccacaaaaaattagagtagtcatccaccaacaaaacataatatctatggcccgaagaactcaaaacaggagatgtccaaatatcactatggat |
1851399 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
1851398 |
aatgtcaaatggca |
1851385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 427
Target Start/End: Complemental strand, 34011846 - 34011426
Alignment:
| Q |
7 |
agcatgatgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttga |
106 |
Q |
| |
|
|||||| ||||||||||| | ||||| || || |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
34011846 |
agcatggtgccaaaatgaagatggtaatgacgcgtgaattaataaagttcgaataatattgttaatggaccgtatttttcgttcagatttaccattttga |
34011747 |
T |
|
| Q |
107 |
gaagatgtatatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaa |
206 |
Q |
| |
|
|||||||| || || |||||||||| |||| ||||||||| | |||||| | |||| ||||||| |||| ||||| |||| || |||||||| |||| |
|
|
| T |
34011746 |
gaagatgtgtaaggacaagacaaacgaaaaacaattccattagcttcacacattttttgaaaattactattgacatattcaccgccgttgtcacattgaa |
34011647 |
T |
|
| Q |
207 |
tggttttaatttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaa |
306 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||| || | ||||||| ||| | || ||||| ||||| ||||| || |||| |||||||| |
|
|
| T |
34011646 |
ttgttttaatttctctttgaaattgtgtgttgatgtgtgctcttagtttttcaaaaattggataaacttgggatttatgtgacattggaaaagtccacaa |
34011547 |
T |
|
| Q |
307 |
aaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggc |
406 |
Q |
| |
|
||||||||| |||| |||||| || |||||||||||||| ||||| | ||||||||| | ||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
34011546 |
aaaatttgaataattatccaagaaaagaacataatatttgtgaccaactgaacttaaaataggagaggtccatacatcactatgtaaaatatcaaatggc |
34011447 |
T |
|
| Q |
407 |
aacaaactatgattatgagaa |
427 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
34011446 |
aacaaacttctattatgagaa |
34011426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 4187759 - 4188177
Alignment:
| Q |
7 |
agcatgatgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttga |
106 |
Q |
| |
|
|||||| ||||||||||| | ||||| || || |||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
4187759 |
agcatggtgccaaaatgaagatggtaatgacgcgtgaattaataaagttcgaataatattgttagtggaccgtatttttcgttcagatttaccattttga |
4187858 |
T |
|
| Q |
107 |
gaagatgtatatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaa |
206 |
Q |
| |
|
|||||||| || || |||||||||| |||| ||||||||| | |||||| | |||| ||||||| |||| |||| |||| ||||||||||| |||| |
|
|
| T |
4187859 |
gaagatgtgtaaggacaagacaaacgaaaaacaattccattagcttcacacattttttgaaaattactattgacat--tcaccgccattgtcacattgaa |
4187956 |
T |
|
| Q |
207 |
tggttttaatttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaa |
306 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||| || | ||||||| ||| | || ||||| ||||| ||||| || |||| |||||||| |
|
|
| T |
4187957 |
ttgttttaatttctctttgaaattgtgtgttgatgtgtgctcttagtttttcaaatattggataaacttgggatttatgtgacattggaaaagtccacaa |
4188056 |
T |
|
| Q |
307 |
aaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggc |
406 |
Q |
| |
|
||||||||| |||| |||||| || |||||||||||||| ||||| | ||||||||| || ||||| |||| |||||| ||||||||||||||||| ||| |
|
|
| T |
4188057 |
aaaatttgaataattatccaagaaaagaacataatatttgtgaccaactgaacttaaaactggagaggtccgtacatcactatgtaaaatatcaaatggc |
4188156 |
T |
|
| Q |
407 |
aacaaactatgattatgagaa |
427 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
4188157 |
aacaaacttctattatgagaa |
4188177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 33285364 - 33284962
Alignment:
| Q |
14 |
tgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttgagaagatg |
113 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||| |||||||||||||| || |||||||| ||||||||||| |||| ||| |||||||||| ||| | |
|
|
| T |
33285364 |
tgccaaaatgatggaggtagggatgcatgaattaataaagttcgaataatgttattaatggatcgtatttttcgctcagctttaccattttgaggagagg |
33285265 |
T |
|
| Q |
114 |
tatatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaatggtttt |
213 |
Q |
| |
|
|||| || || || | || ||| ||||||||| |||||| | ||||||||||| ||| ||||| || | |||||| ||||||| ||| ||||| |
|
|
| T |
33285264 |
tataaggacatgagagacgaaaggaaattccattaagttcacacatatttcgaaaattattagaaacatattctccaccattatcacactaaattgtttt |
33285165 |
T |
|
| Q |
214 |
aatttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaaaaaattt |
313 |
Q |
| |
|
|| ||| |||||||||||| || |||||||| || | ||||||||| || || ||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
33285164 |
gatatcccgttgaaattgtgttttgatgtaagctcgcaatttttgaaaaataggataaacttgagatttatgtgaaatggggaatgtccacaaaaaatta |
33285065 |
T |
|
| Q |
314 |
gagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggcaacaaac |
413 |
Q |
| |
|
|| || | ||||||||| | |||||||||||| |||||| || ||||| | ||||||||||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
33285064 |
gaatagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatgtccatacatcactatgtagaatatcaaaaggtaacaaac |
33284965 |
T |
|
| Q |
414 |
tat |
416 |
Q |
| |
|
||| |
|
|
| T |
33284964 |
tat |
33284962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 48101833 - 48101945
Alignment:
| Q |
296 |
aatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaa |
395 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | ||||||||| |||||| | | |||||| | ||| || ||||||| ||| || ||||||| |
|
|
| T |
48101833 |
aatgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtacttaaaatcggtgaagtccataaatcactgtgtaaaa |
48101932 |
T |
|
| Q |
396 |
tatcaaaaggcaa |
408 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
48101933 |
tatcaaagggcaa |
48101945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 38616252 - 38616672
Alignment:
| Q |
7 |
agcatgatgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttga |
106 |
Q |
| |
|
|||||| ||||||||||| | ||||| || || |||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
38616252 |
agcatggtgccaaaatgaagatggtaatgacgcgtgaattaataaagtttgaataatattgttaatggaccgtatttttcgttcagatttaccattttga |
38616351 |
T |
|
| Q |
107 |
gaagatgtatatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaa |
206 |
Q |
| |
|
|||||||| || || ||||| |||| |||| |||| |||| | |||||| | |||||||||||| |||| ||||| |||| || || ||||| |||| |
|
|
| T |
38616352 |
gaagatgtgtaaggacaagaaaaacgaaaaacaatttcattagcttcacacatttttcgaaaatttctattgacatattcaccgccgttatcacattgaa |
38616451 |
T |
|
| Q |
207 |
tggttttaatttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaa |
306 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||| || | ||||||| ||| | || ||||| ||||| ||||| || |||| |||||||| |
|
|
| T |
38616452 |
ttgttttaatttctctttgaaattgtgtgttgatgtgtgctcttagtttttcaaaaattggataaacttgggatttatgtgacattggaaaagtccacaa |
38616551 |
T |
|
| Q |
307 |
aaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggc |
406 |
Q |
| |
|
||||||||| |||| |||||| || |||||||||||||| ||||| | ||||||||| || |||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
38616552 |
aaaatttgaataattatccaagaaaagaacataatatttgtgaccaactgaacttaaaacacgagaggtccatacatcactatgtaaaatatcaaatggc |
38616651 |
T |
|
| Q |
407 |
aacaaactatgattatgagaa |
427 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
38616652 |
aacaaacttctattatgagaa |
38616672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 504 - 591
Target Start/End: Original strand, 1450972 - 1451059
Alignment:
| Q |
504 |
aatgtaagttcttattgatttattttcatgaacaatattctgtttgcttgtaacaaatatgtaaacaagagtcaaaatggattaattt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1450972 |
aatgtaagttcttattgatttattttcatgaagagttcgttgtttccttgtaacaaatacgtaaacaagagtcaaaatggattaattt |
1451059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 44354746 - 44354881
Alignment:
| Q |
272 |
acttgagatttttgtgaaatgagaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggag |
371 |
Q |
| |
|
|||| |||||| | |||||| |||||||||| ||||||||||||| |||||||| ||| ||| |||||||||| ||||| || || || | || |||| |
|
|
| T |
44354746 |
acttaagatttgtttgaaatcggaaatgtccataaaaaatttgagtgatcatccagaaaaagagcataatatttgtgacccaaagagctcataacgggag |
44354845 |
T |
|
| Q |
372 |
atgtccatacatcgctatgtaaaatatcaaaaggca |
407 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
44354846 |
aagtccatacatcactatgcaaaatatcaaatggca |
44354881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 50 - 407
Target Start/End: Complemental strand, 36039048 - 36038691
Alignment:
| Q |
50 |
aaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttgagaagatgtatatgggcaagacaaacaaaaatgaattccattgg |
149 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||||||||||||| ||| |||||||||||||| ||||| || || || |||| ||| ||||||||| | |
|
|
| T |
36039048 |
aaagtccgaattatattattaatagaacggatttttcgttcagctttgccattttgagaagaagtataaggacacgagaaacgaaatgaaattccatttg |
36038949 |
T |
|
| Q |
150 |
tttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaatggttttaatttccttttgaaattgtgtgtttatgtaagcac- |
248 |
Q |
| |
|
|||||| | ||| ||||| ||| ||||| || | |||||| ||||||||||| |||||| |||| |||||||| || || || || || | |
|
|
| T |
36038948 |
cttcacagagtttctgaaaaggaccattgacatattctctaccattatcacactgaataattttaacttccccatgaaattgagttttaatatatgctct |
36038849 |
T |
|
| Q |
249 |
gaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatg |
348 |
Q |
| |
|
|| |||| |||| || | ||||| ||||||||||||| | || |||||||| |||||||| || ||||||||| | || |||||||||||||| |
|
|
| T |
36038848 |
taaattttcaaaagttgga-aaaacttgcaatttttgtgaaattgggaaagtccacaagaaatttgaatagtcatccaaatagagcacataatatttatg |
36038750 |
T |
|
| Q |
349 |
acctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggca |
407 |
Q |
| |
|
||| | ||| || || ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
36038749 |
accggaaatactcaatacgggagatgtccatacatcactatgtaatatatcaaatggca |
36038691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 591
Target Start/End: Original strand, 1535926 - 1535959
Alignment:
| Q |
558 |
aaatatgtaaacaagagtcaaaatggattaattt |
591 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
1535926 |
aaatatgtaaacaagggtcaaaatggattaattt |
1535959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 33130 - 33532
Alignment:
| Q |
14 |
tgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttgagaagatg |
113 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||| |||||||||||||| || |||||||| ||||||||||| ||| ||| |||||||||| ||| | |
|
|
| T |
33130 |
tgccaaaatgatggaggtagggatgcatgaattaataaagttcgaataatgttattaatggatcgtatttttcgctcaactttaccattttgaggagagg |
33229 |
T |
|
| Q |
114 |
tatatgggcaagacaaacaaaaatgaattccattggtttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaatggtttt |
213 |
Q |
| |
|
|||| || || || | || ||| ||||||||| |||||| | ||||||||||| ||| ||||| || | || ||| ||||||||||| ||||| |
|
|
| T |
33230 |
tataaggccatgagagacgaaaggaaattccattaagttcacacatatttcgaaaattattagagacatattctccacaattatcacactgaattgtttt |
33329 |
T |
|
| Q |
214 |
aatttccttttgaaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaaaaaattt |
313 |
Q |
| |
|
|| ||| |||||||||||| || |||||||| || ||||||||||| || || ||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
33330 |
gatatcccgttgaaattgtgttttgatgtaagctcgcagtttttgaaaaataggataaacttgagatttatgtgaaatggggaatgtccacaaaaaatta |
33429 |
T |
|
| Q |
314 |
gagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggcaacaaac |
413 |
Q |
| |
|
|| | | ||||||||| | |||||||||||| |||||| || ||||| | ||||||| ||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
33430 |
gaacagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatggccatacatcactatgtagaatatcaaaaggtaacaaac |
33529 |
T |
|
| Q |
414 |
tat |
416 |
Q |
| |
|
||| |
|
|
| T |
33530 |
tat |
33532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 36430 - 36317
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
|||| |||||||| ||||||| |||||||| ||||| || ||||||||||||||||| |||||||| | ||||| ||||| | ||| |||||||| |
|
|
| T |
36430 |
gaaaagtccacaagaaatttgtataatcatctaaaaataggacataatatttatgaccagcagaacttaaaattggagacgtccacaaatcactatgtaa |
36331 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36330 |
aatatcaaaaggca |
36317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 407
Target Start/End: Complemental strand, 16090386 - 16090251
Alignment:
| Q |
272 |
acttgagatttttgtgaaatgagaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggag |
371 |
Q |
| |
|
||||| |||||||||||||| | || |||||||| ||||| || || ||||||||| | || |||||||||||||||| | | || || || |||| |
|
|
| T |
16090386 |
acttgcgatttttgtgaaattgggaaagtccacaagaaattcgaatagtcatccaaatagagcacataatatttatgactggaagtgctcaatacgggag |
16090287 |
T |
|
| Q |
372 |
atgtccatacatcgctatgtaaaatatcaaaaggca |
407 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
16090286 |
atgtccatacatcactatgtaatatatcaaatggca |
16090251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 7326491 - 7326661
Alignment:
| Q |
50 |
aaagttcgaataatattgttaatggaacgtatttttcgttcagattttccattttgagaagatgtatatgggcaagacaaacaaaaatgaattccattgg |
149 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||||||||||| ||| ||||||||||| || |||| || || || || | ||| ||||||||| | |
|
|
| T |
7326491 |
aaagtccgaattatattattaatggatcggatttttcgttcagctttgccattttgagatgaagtatgaggacacgagaagcgaaatgaaattccatttg |
7326590 |
T |
|
| Q |
150 |
tttcacataattttcgaaaattgttatttacatactcacaaccattgtcacactgaatggttttaatttcc |
220 |
Q |
| |
|
|||||| | |||| |||||||| ||| ||||| || | |||||| ||||||||||| |||||| |||| |
|
|
| T |
7326591 |
cttcacagagtttttgaaaattgccattgacatattctctaccattatcacactgaatatttttaacttcc |
7326661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 45032473 - 45032362
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
|||| |||||||| ||||||| | | || || ||||| ||||||||||||||||| || |||||||| || ||||| ||||| | || |||||||| |
|
|
| T |
45032473 |
gaaaggtccacaagaaatttgtgaagtcgtctaaaaatagaacataatatttatggccagcagaacttaaaacaggagaagtccacaagtcactatgtaa |
45032374 |
T |
|
| Q |
394 |
aatatcaaaagg |
405 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45032373 |
aatatcaaaagg |
45032362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 24207843 - 24207730
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
|||| |||||||| ||||||| | | || || ||||| | ||||||||||||||| || |||||||| || ||||| ||||| | || |||||||| |
|
|
| T |
24207843 |
gaaaggtccacaagaaatttgtgaagtcgtctaaaaataaaacataatatttatggccagcagaacttaaaacaggagaagtccacaagtcactatgtaa |
24207744 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24207743 |
aatatcaaaaggca |
24207730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 45027625 - 45027512
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
|||| |||||||| ||||||| | | || || ||||| | ||||||||||||||| || |||||||| || ||||| ||||| | || |||||||| |
|
|
| T |
45027625 |
gaaaagtccacaagaaatttgtgaagtcgtctaaaaataaaacataatatttatggccagcagaacttaaaacaggagaagtccacaagtcactatgtaa |
45027526 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45027525 |
aatatcaaaaggca |
45027512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 9934551 - 9934663
Alignment:
| Q |
296 |
aatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaa |
395 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | ||||||||| |||||| | | |||||| | ||| || ||||||| ||| | ||||||| |
|
|
| T |
9934551 |
aatgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtacttaaaatcggtgaagtccataaatcattgtgtaaaa |
9934650 |
T |
|
| Q |
396 |
tatcaaaaggcaa |
408 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
9934651 |
tatcaaagggcaa |
9934663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 20330 - 20217
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||| |||||||||| |||| || | ||||| || || ||||||||||| | ||| ||||| | |
|
|
| T |
20330 |
gaaatgtccacaaaaaattagagtagtcatccacaaacaaaacataatatctatggcccgaagaactcaaaacaggagatgtccaaatatcactatggat |
20231 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
20230 |
aatgtcaaatggca |
20217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 7082597 - 7082484
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||| |||||||||| |||| || | ||||| || || ||||||||||| | ||| ||||| | |
|
|
| T |
7082597 |
gaaatgtccacaaaaaattagagtagtcatccacaaacaaaacataatatctatggcccgaagaactcaaaacaggagatgtccaaatatcactatggat |
7082498 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
7082497 |
aatgtcaaatggca |
7082484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 8398267 - 8398185
Alignment:
| Q |
5 |
agagcatgatgccaaaatgatgtgggtaacgatgcatgaagtaacaaagttcgaataatattgttaatggaacgtatttttcg |
87 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||| ||| |||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
8398267 |
agagcatattgccaaaatgatggaggtaggaatgcatgaattaataaagttcgaataatgttattaatggatcgtatttttcg |
8398185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 28081934 - 28081871
Alignment:
| Q |
440 |
ataagaatagaattccttgattgtattgatatatcatttgtgaaaatgtatacaactgtttacaaa |
505 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
28081934 |
ataagaatataattctctgattgtattgatat--catttgtgaaaatatatacaactgttttcaaa |
28081871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 16592409 - 16592337
Alignment:
| Q |
335 |
acataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggca |
407 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
16592409 |
acataatatttatgaccagcagaacttaaaattggagacgtccataaatcactatgtaaaatatcaaaaggca |
16592337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 33163861 - 33163748
Alignment:
| Q |
294 |
gaaatgtccacaaaaaatttgagtaatcatccaaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaa |
393 |
Q |
| |
|
|||| |||||||| ||||||| | | || || ||||| | ||||||||||||||| || |||||||| || ||||| ||||| | || |||||||| |
|
|
| T |
33163861 |
gaaaggtccacaagaaatttgtgaagtcgtctaaaaataaaacataatatttatggccagcagaacttaaaacaggagaagtccacaagtcactatgtaa |
33163762 |
T |
|
| Q |
394 |
aatatcaaaaggca |
407 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33163761 |
aatatcaaaaggca |
33163748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 389
Target Start/End: Complemental strand, 25040734 - 25040572
Alignment:
| Q |
226 |
aaattgtgtgtttatgtaagcacgaagtttttgaaagcaagagtatacttgagatttttgtgaaatgagaaatgtccacaaaaaatttgagtaatcatcc |
325 |
Q |
| |
|
||||||||| || |||||||| || ||||||||||| | || |||||||||| | |||||||| ||||||||||||||||||| || || | |||| |
|
|
| T |
25040734 |
aaattgtgttttgatgtaagctcgcagtttttgaaaaatatgataaacttgagattat-gtgaaatgggaaatgtccacaaaaaattagaatagttatcc |
25040636 |
T |
|
| Q |
326 |
aaaaacagaacataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctat |
389 |
Q |
| |
|
|| | | |||||||||||| |||| | || ||||| | ||||||||||||||||| |||| |
|
|
| T |
25040635 |
aagagtaaaacataatatttgtgacatgtcgagcttaaaatgggagatgtccatacatcactat |
25040572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 29667 - 29590
Alignment:
| Q |
335 |
acataatatttatgacctaatgaacttaagaccggagatgtccatacatcgctatgtaaaatatcaaaaggcaacaaa |
412 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| ||||||| ||| ||||||||||||||||| |||| |||| |
|
|
| T |
29667 |
acataatatttatgaccagcagaacttaaaattggagacgtccataaatcactatgtaaaatatcaaacggcatcaaa |
29590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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