View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_high_17 (Length: 539)

Name: NF17209_high_17
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_high_17
NF17209_high_17
[»] chr1 (6 HSPs)
chr1 (18-415)||(45684457-45684854)
chr1 (416-531)||(20186825-20186940)
chr1 (416-531)||(30339636-30339751)
chr1 (416-531)||(51787272-51787387)
chr1 (422-531)||(9672956-9673062)
chr1 (416-516)||(43740406-43740506)
[»] chr3 (6 HSPs)
chr3 (420-531)||(49786397-49786508)
chr3 (415-531)||(8436880-8436996)
chr3 (416-531)||(47940826-47940941)
chr3 (416-531)||(8152977-8153094)
chr3 (416-531)||(29836754-29836868)
chr3 (422-516)||(48778972-48779066)
[»] chr7 (10 HSPs)
chr7 (416-531)||(48057683-48057798)
chr7 (416-531)||(496683-496798)
chr7 (416-531)||(11765707-11765822)
chr7 (416-531)||(42535198-42535313)
chr7 (416-531)||(2286458-2286573)
chr7 (416-531)||(25185917-25186032)
chr7 (423-531)||(23844642-23844750)
chr7 (420-531)||(7527248-7527359)
chr7 (416-531)||(31427244-31427361)
chr7 (436-531)||(40855135-40855231)
[»] chr2 (2 HSPs)
chr2 (416-531)||(13922185-13922300)
chr2 (419-531)||(11828960-11829072)
[»] chr5 (5 HSPs)
chr5 (417-531)||(38280257-38280371)
chr5 (416-531)||(25955944-25956059)
chr5 (416-531)||(1501353-1501468)
chr5 (416-531)||(42250116-42250231)
chr5 (416-524)||(7886355-7886463)
[»] chr4 (3 HSPs)
chr4 (416-531)||(52055132-52055247)
chr4 (416-531)||(1158239-1158354)
chr4 (436-524)||(49866670-49866758)
[»] chr8 (2 HSPs)
chr8 (416-531)||(4076928-4077043)
chr8 (421-531)||(3780343-3780453)
[»] chr6 (1 HSPs)
chr6 (416-531)||(33594503-33594618)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 45684457 - 45684854
Alignment:
Q  18 ataaaaagcttctttttccacttggtatgttcgtcgaaacttacatgatccatttagacttgggtgatttgctgcattagattctgttgagcgccaagta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45684457 ataaaaagcttctttttccacttggtatgttcgtcgaaacttacatgatccatttagacttgggtgatttgctgcattagattctgttgagcgccaagta 45684556  T
Q  118 gacaatggaactttctgctgcaagatttttcctgcagtgactggtgtcttctaaaatgggttagaattggatgctttcaagaatgaatttagaaaaatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45684557 gacaatggaactttctgctgcaagatttttcctgcagtgactggtgtcttctaaaatgggttagaattggatgctttcaagaatgaatttaaaaaaatga 45684656  T
Q  218 tactagtttggcatcctctagtgtgtataatatatccaagagagttgagatccgaagaaacagaggaaataaggtgttacagtacagctcagagttgaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45684657 tactagtttggcatcctctagtgtgtataatatatccaagagagttgagatccgaagaaacagaggaaataaggtgttacagtacagctcagagttgaat 45684756  T
Q  318 ctattgttttctttgacagaaagctgaagttagttagacagttaattcccagctatagtagttagtgtctgatatattctcgatagctagttaagtgg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45684757 ctattgttttctttgacagaaagctgaagttagttagacagttaattcccagctatattagttagtgtctgatatattctcgatagctagttaagtgg 45684854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 20186940 - 20186825
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctctt 20186841  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  20186840 ctctttcatccatctc 20186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 30339636 - 30339751
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 30339735  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  30339736 ctctttcatccatctc 30339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 51787272 - 51787387
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctctt 51787371  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  51787372 ctctttcatgcatctc 51787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 422 - 531
Target Start/End: Complemental strand, 9673062 - 9672956
Alignment:
Q  422 tgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctcttt 521  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacac--tgtctctcttctcttt 9672966  T
Q  522 cattcatctc 531  Q
    ||| ||||||    
T  9672965 catccatctc 9672956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 43740506 - 43740406
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||||||||| |||| ||| |||||| |  ||| ||||||||||| |||||| |||||||||| | ||| |||| ||| |||||||||||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T
Q  516 c 516  Q
    |    
T  43740406 c 43740406  T

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Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 420 - 531
Target Start/End: Original strand, 49786397 - 49786508
Alignment:
Q  420 ggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctct 519  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctct 49786496  T
Q  520 ttcattcatctc 531  Q
    ||||||||||||    
T  49786497 ttcattcatctc 49786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 415 - 531
Target Start/End: Complemental strand, 8436996 - 8436880
Alignment:
Q  415 ggagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 514  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| || ||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  8436996 ggagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctct 8436897  T
Q  515 tctctttcattcatctc 531  Q
    |||||||||| ||||||    
T  8436896 tctctttcatccatctc 8436880  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 47940826 - 47940941
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||| |||||||||| ||||| || |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  47940826 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 47940925  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  47940926 ccttttcatccatctc 47940941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 8152977 - 8153094
Alignment:
Q  416 gagtggtgatacatgt--acacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 513  Q
    |||||||||||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctc 8153076  T
Q  514 ttctctttcattcatctc 531  Q
    |||||||| || ||||||    
T  8153077 ttctcttttatccatctc 8153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 29836868 - 29836754
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||| |||| |||  || |||| |||||||||| ||||||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctctt 29836770  T
Q  516 ctctttcattcatctc 531  Q
    |||| |||||| ||||    
T  29836769 ctctctcattcgtctc 29836754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 48779066 - 48778972
Alignment:
Q  422 tgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 516  Q
    ||||||||| ||||| ||||||||||||| || |||||| |||||||||| |||||||| |||  |||||| ||| ||||||||| |||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctcttc 48778972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 48057798 - 48057683
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 48057699  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  48057698 ctctttcatccatctc 48057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 496683 - 496798
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctctt 496782  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  496783 ctctttcatccatctc 496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 11765707 - 11765822
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11765707 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctctt 11765806  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  11765807 ctctttcatccatctc 11765822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 42535313 - 42535198
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctctt 42535214  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  42535213 ctctttcatccatctc 42535198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 2286458 - 2286573
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||| |||||||||| ||||| || |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  2286458 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 2286557  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  2286558 ccttttcatccatctc 2286573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 25186032 - 25185917
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||||||||| |||| |||| |||||||| ||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctctt 25185933  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  25185932 ccttttcatccatctc 25185917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 423 - 531
Target Start/End: Original strand, 23844642 - 23844750
Alignment:
Q  423 gatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctttc 522  Q
    |||||||| ||| ||||||||  |||||||||| |||  ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||  ||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T
Q  523 attcatctc 531  Q
    || ||||||    
T  23844742 atccatctc 23844750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 420 - 531
Target Start/End: Complemental strand, 7527359 - 7527248
Alignment:
Q  420 ggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctct 519  Q
    ||||||||||| | |  ||| |||||||||||||||||||| |||||| |||||||||||| ||| ||||||| ||| ||||||||||||||| || | |    
T  7527359 ggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctctttttttt 7527260  T
Q  520 ttcattcatctc 531  Q
    ||||| ||||||    
T  7527259 ttcatccatctc 7527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 31427361 - 31427244
Alignment:
Q  416 gagtggtgatacatgtacacccataggtg--gcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 513  Q
    ||||||||||||||| ||| |||||||||  ||||||| | |||||| ||| |||||| |||||||| |||   ||||| ||||||||||||||||||||    
T  31427361 gagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctctc 31427262  T
Q  514 ttctctttcattcatctc 531  Q
    ||| || |||| ||||||    
T  31427261 ttccctctcatccatctc 31427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 531
Target Start/End: Complemental strand, 40855231 - 40855135
Alignment:
Q  436 ccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtc-ctagaccccacaaacactttgtctctcttctctttcattcatctc 531  Q
    ||||| |||| ||| |||||||||| || ||| |||||||||||  |||   ||||||| |||||||||||||||||| ||| ||||||||||||||    
T  40855231 ccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctcttttccctttcattcatctc 40855135  T

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Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 13922185 - 13922300
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 13922284  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  13922285 ctctttcatccatctc 13922300  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 419 - 531
Target Start/End: Original strand, 11828960 - 11829072
Alignment:
Q  419 tggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctc 518  Q
    |||||| ||||| |||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcctc 11829059  T
Q  519 tttcattcatctc 531  Q
    |||||| ||||||    
T  11829060 tttcatccatctc 11829072  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 417 - 531
Target Start/End: Complemental strand, 38280371 - 38280257
Alignment:
Q  417 agtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 516  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 38280272  T
Q  517 tctttcattcatctc 531  Q
    |||||||| ||||||    
T  38280271 tctttcatccatctc 38280257  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 25956059 - 25955944
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 25955960  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  25955959 ccttttcatccatctc 25955944  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 1501468 - 1501353
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||| | | ||||||||| ||||||||||||||| ||||||||||||| ||||| ||  ||||||||||| | ||||||||||||||||    
T  1501468 gagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctctt 1501369  T
Q  516 ctctttcattcatctc 531  Q
    ||||||||| ||||||    
T  1501368 ctctttcatccatctc 1501353  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 42250116 - 42250231
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||| |||||||||  || |||| |||||||||| |||||| |||||||||||| ||| | ||||||||||||||||||||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctctt 42250215  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  42250216 ccttttcatccatctc 42250231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 7886355 - 7886463
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||||||||| |||| | ||  ||||||| ||||||||||||||| |||||| |||||||||||| ||| |||| | |||||| | | ||||||||||||    
T  7886355 gagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctctt 7886454  T
Q  516 ctctttcat 524  Q
    | |||||||    
T  7886455 ccctttcat 7886463  T

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Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 52055247 - 52055132
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||||||||||||| |||  |||||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 52055148  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  52055147 ccttttcatccatctc 52055132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 1158354 - 1158239
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||| ||||||||| ||| | ||||  ||| ||||||||||||| |||||| |||||||||||| ||| ||||||||| ||||||| ||||||||||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctctt 1158255  T
Q  516 ctctttcattcatctc 531  Q
    | ||||||||||||||    
T  1158254 ccctttcattcatctc 1158239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 524
Target Start/End: Original strand, 49866670 - 49866758
Alignment:
Q  436 ccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctttcat 524  Q
    |||||||||| |||||| ||||||| | |||| ||| |||||||| ||| | |||||| || |||||||||||||||||||||||||||    
T  49866670 ccataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcat 49866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 4077043 - 4076928
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctctt 4076944  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  4076943 ccttttcatccatctc 4076928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 421 - 531
Target Start/End: Complemental strand, 3780453 - 3780343
Alignment:
Q  421 gtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctt 520  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||| ||  |||| |||| | ||||||||||||||||||| |||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccctt 3780354  T
Q  521 tcattcatctc 531  Q
    |||| ||||||    
T  3780353 tcatccatctc 3780343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 33594618 - 33594503
Alignment:
Q  416 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 515  Q
    |||| |||||||||| ||| |||| |||||||||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctctt 33594519  T
Q  516 ctctttcattcatctc 531  Q
    |  |||||| ||||||    
T  33594518 ccttttcatccatctc 33594503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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