View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_high_2 (Length: 843)

Name: NF17209_high_2
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_high_2
NF17209_high_2
[»] chr1 (15 HSPs)
chr1 (255-812)||(9168491-9169048)
chr1 (19-258)||(9169794-9170033)
chr1 (758-843)||(15629373-15629458)
chr1 (758-843)||(15630172-15630257)
chr1 (19-71)||(9161155-9161207)
chr1 (758-843)||(6696015-6696100)
chr1 (757-837)||(2071561-2071642)
chr1 (758-842)||(28664975-28665063)
chr1 (757-829)||(2075099-2075172)
chr1 (26-71)||(9155243-9155288)
chr1 (758-837)||(2073399-2073479)
chr1 (758-837)||(2076931-2077011)
chr1 (20-60)||(9146394-9146434)
chr1 (29-64)||(9119256-9119291)
chr1 (19-53)||(9218082-9218116)
[»] chr7 (8 HSPs)
chr7 (758-842)||(2628270-2628354)
chr7 (758-840)||(15614279-15614361)
chr7 (759-842)||(21814428-21814510)
chr7 (758-843)||(46963090-46963175)
chr7 (758-843)||(46964444-46964529)
chr7 (780-840)||(6840635-6840695)
chr7 (758-834)||(6841471-6841547)
chr7 (758-827)||(21811668-21811737)
[»] chr6 (8 HSPs)
chr6 (758-842)||(21862689-21862773)
chr6 (759-841)||(33424005-33424087)
chr6 (758-843)||(18984497-18984582)
chr6 (758-843)||(18792869-18792954)
chr6 (787-843)||(9290680-9290736)
chr6 (796-843)||(22868499-22868546)
chr6 (758-842)||(10741772-10741855)
chr6 (758-791)||(21858039-21858072)
[»] chr2 (5 HSPs)
chr2 (757-843)||(8985573-8985659)
chr2 (758-843)||(32291155-32291240)
chr2 (758-843)||(8986927-8987012)
chr2 (757-831)||(29409109-29409183)
chr2 (758-830)||(32276940-32277011)
[»] chr3 (9 HSPs)
chr3 (758-843)||(42531289-42531374)
chr3 (759-842)||(16462968-16463050)
chr3 (758-843)||(46691475-46691559)
chr3 (758-835)||(50297460-50297537)
chr3 (758-842)||(18088161-18088244)
chr3 (758-843)||(50294658-50294741)
chr3 (758-843)||(42530590-42530674)
chr3 (758-837)||(814419-814498)
chr3 (758-827)||(814260-814329)
[»] chr4 (5 HSPs)
chr4 (758-843)||(16871651-16871736)
chr4 (758-841)||(16543360-16543443)
chr4 (765-843)||(16869513-16869591)
chr4 (755-842)||(54148272-54148358)
chr4 (793-843)||(37945519-37945569)
[»] scaffold0511 (1 HSPs)
scaffold0511 (758-843)||(11187-11272)
[»] chr8 (2 HSPs)
chr8 (758-843)||(43615458-43615543)
chr8 (761-838)||(33199412-33199490)
[»] chr5 (1 HSPs)
chr5 (760-843)||(24137600-24137683)
[»] scaffold0002 (1 HSPs)
scaffold0002 (758-840)||(406274-406356)
[»] scaffold0325 (1 HSPs)
scaffold0325 (757-843)||(14552-14639)


Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 255 - 812
Target Start/End: Complemental strand, 9169048 - 9168491
Alignment:
Q  255 cctaatctcatgttccacttgtttaccaaatagagttgtgaagtttaaagcagtagattttgtgattccttgttggcggtcacctttggcagccattacc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  9169048 cctaatctcatgttccacttgtttaccaaatagagttgtgaagtttaaagcactagattttgtgattccttgttggcggtcacctttggcagctattacc 9168949  T
Q  355 atagttaaacatttnnnnnnnttgttagcattaggtatggtttcacgaagtctagcaagcttattcacaccgtgagaaaatctcttttgcaaatctgcaa 454  Q
    ||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9168948 atagttaaacatttaaaaaatttgttagcattaggtaaggtttcacgaagtctagcaagcttattcacaccatgagaaaatctcttttgcaaatctgcaa 9168849  T
Q  455 acaatttcattgtgcatcatacgaaagagctcatatctttgaacaagtgtatttatcttcgattgttttaccacaattgtctccttgtggatgacttgaa 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9168848 acaatttcattgtgcatcatacgaaagagctcatatctttgaacaagtgtatttatcttcgattgttttaccacaattgtctccttgtggatgacttgta 9168749  T
Q  555 aggtatcctaaatcgctttagcattatctccatgcgaggaacgatagtactcttgattccaagggaagcaatgagtatgtttcacaccttcatatcatat 654  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168748 aggtatcctaaatcgctttagcattatctccatgtgaggaacgatagtactcttgattccaagggaagcaatgagtatgtttcacaccttcatatcatat 9168649  T
Q  655 tgaactttcttagatttagcatctgtcaattgatcttctggcttattaaggacgagaatgttttcaatttcaacagaaggcacaaatgaccaattcaaaa 754  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  9168648 tgaactttcttagatttagcatctgtcaattgatcttctggcttattaaggacgggaatgttttcaatttcaatagaaggcacaaatgaccaattcaaaa 9168549  T
Q  755 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta 812  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9168548 aggtgttagataataaagtattgcacttaagctattgaacctttatatcagtaagtta 9168491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 9170033 - 9169794
Alignment:
Q  19 tgattgccttggatgatggaagatgattgtgatatgtcaaaatatatatacttttatttttgttctatccatttgaattatttttgtattctgtgtgatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9170033 tgattgccttggatgatggaagatgattgtgatatgtcaaaatatatatacttttatttttgttctatccatttgaattatttttgtattctgtgtgatt 9169934  T
Q  119 gacccaatcattttcttgattttaattttatttattgaaaactttcggtacaattcattataggatcaataaaatctctatgttatcaattttgtaatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9169933 gacccaatcattttcttgattttaattttatttattgaaaactttcggtacaattcattataggatcaataaaatctctatgttatcaattttgtaatca 9169834  T
Q  219 tgttattggtgcagagtatctactaatttgtcgttaccta 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9169833 tgttattggtgcagagtatctactaatttgtcgttaccta 9169794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 758 - 843
Target Start/End: Complemental strand, 15629458 - 15629373
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||| ||||| ||||||| ||||| |||||||||| ||||||||| ||| |||||| |||||||||||||||||||    
T  15629458 tgttagataataaaatattgggcttaagttattggacctttatattagtaagttagagttcattagattttattatatattctctt 15629373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 758 - 843
Target Start/End: Complemental strand, 15630257 - 15630172
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||| |||||||||||||| ||||||  |||||  ||||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  15630257 tgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctctt 15630172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 9161207 - 9161155
Alignment:
Q  19 tgattgccttggatgatggaagatgattgtgatatgtcaaaatatatatactt 71  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  9161207 tgattgccttagatgatggaagatgattgtgatatgtcaaaatatgtatactt 9161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 6696015 - 6696100
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||| ||||||||||    
T  6696015 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctctt 6696100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 757 - 837
Target Start/End: Complemental strand, 2071642 - 2071561
Alignment:
Q  757 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggttttattatatat 837  Q
    ||||||||||||||| ||||| |||||||||||||  |||| |||| |||||||||  ||| |||||||||||| |||||||    
T  2071642 gtgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttttagtatatat 2071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 758 - 842
Target Start/End: Original strand, 28664975 - 28665063
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctatt-ga----acctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    |||||||||||||||||||| |||||| ||||| ||    |||||||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  28664975 tgttagataataaagtattgagcttaaactattagattagacctttatattagtaagttagagtccattaggttt-attatatattctct 28665063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 829
Target Start/End: Complemental strand, 2075172 - 2075099
Alignment:
Q  757 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggtttta 829  Q
    ||||||||||||||| ||||| |||||||||||||  |||| |||| |||||||||  ||| ||||||||||||    
T  2075172 gtgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggtttta 2075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 9155288 - 9155243
Alignment:
Q  26 cttggatgatggaagatgattgtgatatgtcaaaatatatatactt 71  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||||    
T  9155288 cttggatgatggaagatgattctgatatctcaaaatatgtatactt 9155243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 837
Target Start/End: Complemental strand, 2073479 - 2073399
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggttttattatatat 837  Q
    |||||||||||||| ||||| ||||||||||||   |||| |||| |||||||||  ||| |||||||||||| |||||||    
T  2073479 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatat 2073399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 837
Target Start/End: Complemental strand, 2077011 - 2076931
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagtta-tagtacattaggttttattatatat 837  Q
    |||||||||||||| ||||| ||||||||||||   |||| |||| |||||||||  ||| |||||||||||| |||||||    
T  2077011 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatat 2076931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 9146434 - 9146394
Alignment:
Q  20 gattgccttggatgatggaagatgattgtgatatgtcaaaa 60  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  9146434 gattgccttggatgatggaagatgactgtgatatttcaaaa 9146394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 9119256 - 9119291
Alignment:
Q  29 ggatgatggaagatgattgtgatatgtcaaaatata 64  Q
    |||||||||||||||||||||| |||||||||||||    
T  9119256 ggatgatggaagatgattgtgacatgtcaaaatata 9119291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 9218116 - 9218082
Alignment:
Q  19 tgattgccttggatgatggaagatgattgtgatat 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  9218116 tgattgtcttggatgatggaagatgattgtgatat 9218082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 758 - 842
Target Start/End: Complemental strand, 2628354 - 2628270
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    |||||||||||||||||||| ||||||| ||||||  |||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  2628354 tgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctct 2628270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 758 - 840
Target Start/End: Complemental strand, 15614361 - 15614279
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattct 840  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||| || |||||| ||| |||||||||||||||||||||||    
T  15614361 tgttagataataaagtattgggcttaagttattggacctttatattagcaagttagagtccattaggttttattatatattct 15614279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 759 - 842
Target Start/End: Original strand, 21814428 - 21814510
Alignment:
Q  759 gttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  21814428 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctct 21814510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 843
Target Start/End: Complemental strand, 46963175 - 46963090
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||| ||||||||||    
T  46963175 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattagatattctctt 46963090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 843
Target Start/End: Complemental strand, 46964529 - 46964444
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||||||||||| |||  ||||||| |||||  | ||||||| |||| |||| ||| |||||| |||||||||||||||||||    
T  46964529 tgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctctt 46964444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 780 - 840
Target Start/End: Complemental strand, 6840695 - 6840635
Alignment:
Q  780 cttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattct 840  Q
    |||||| |||||  ||||||||||||||||||| ||| | |||||||||||||||||||||    
T  6840695 cttaagttattgggcctttatatcagtaagttagagtccgttaggttttattatatattct 6840635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 834
Target Start/End: Complemental strand, 6841547 - 6841471
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattata 834  Q
    |||||||||||||| ||| |  |||||| |||||  ||||||||||||||||||| ||| | |||| ||||||||||    
T  6841547 tgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 827
Target Start/End: Original strand, 21811668 - 21811737
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttt 827  Q
    ||||||||||||| |||||| | ||||||||||   ||||||||| ||||||||| |||  |||||||||    
T  21811668 tgttagataataatgtattgggtttaagctattaggcctttatattagtaagttagagtcaattaggttt 21811737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 758 - 842
Target Start/End: Original strand, 21862689 - 21862773
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    |||||||||||||||||||| |||||||||||||   |||||||| || |||||| ||| |||||||||||||||||||||||||    
T  21862689 tgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctct 21862773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 759 - 841
Target Start/End: Complemental strand, 33424087 - 33424005
Alignment:
Q  759 gttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctc 841  Q
    ||||||||||||||||||| ||||||| |||||   |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  33424087 gttagataataaagtattgagcttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctc 33424005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 18984497 - 18984582
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||| |||||||| ||||| |||||   |||||  ||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  18984497 tgttaaataataaaatattgggcttagattattgggcctttatattagtaagttagagtacattatgttttattatatattctctt 18984582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 843
Target Start/End: Complemental strand, 18792954 - 18792869
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||| ||||| |||| || |||||| ||  ||||| ||||||||| ||| ||||| |||||||| |||||||||||    
T  18792954 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctctt 18792869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 843
Target Start/End: Complemental strand, 9290736 - 9290680
Alignment:
Q  787 tattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||    
T  9290736 tattgagcctttatattaataagttagagtccattaggttttattatatattctctt 9290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 796 - 843
Target Start/End: Original strand, 22868499 - 22868546
Alignment:
Q  796 tttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  22868499 tttatattagtaagttagagtccattaggttttattatatattctctt 22868546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 842
Target Start/End: Original strand, 10741772 - 10741855
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    |||||||||||||| ||||| ||||||| |||||   |||||||| || |||||| ||| ||||| | |||||||||||||||||    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatattagaaagttagagtccatta-gatttattatatattctct 10741855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 791
Target Start/End: Original strand, 21858039 - 21858072
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattg 791  Q
    |||||||||||||||||||| |||||||||||||    
T  21858039 tgttagataataaagtattgagcttaagctattg 21858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 757 - 843
Target Start/End: Original strand, 8985573 - 8985659
Alignment:
Q  757 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||||||||||||||||  ||||||| ||||| || ||||||| ||||||||| ||| |||||| |||||||||||||||||||    
T  8985573 gtgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctctt 8985659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 32291155 - 32291240
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||||||||| ||||||| |||||   |||||||| ||||||||| ||| ||||| | ||||||||||||||||||    
T  32291155 tgttagataataaagtattgagcttaagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctctt 32291240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 8986927 - 8987012
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||  |||||||||||||||||||    
T  8986927 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattaaattttattatatattctctt 8987012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 757 - 831
Target Start/End: Complemental strand, 29409183 - 29409109
Alignment:
Q  757 gtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttatt 831  Q
    ||||||||||||||||||||| |||||||||||||| | ||||| | ||||||||| ||| |||||  |||||||    
T  29409183 gtgttagataataaagtattgtgcttaagctattgagcatttattttagtaagttagagtccattaaattttatt 29409109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 758 - 830
Target Start/End: Original strand, 32276940 - 32277011
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttat 830  Q
    ||||||||||| | |||||| ||||||| ||||| |||||||||| ||||||||| ||| |||||||||||||    
T  32276940 tgttagataatta-gtattgagcttaagttattggacctttatattagtaagttagagtccattaggttttat 32277011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 42531289 - 42531374
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||||||||||| |||| |||| || ||||| || ||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  42531289 tgttagataataaaggattgggcttgagttattggacttttatattagtaagttaaagttcattaggttttattatatattctctt 42531374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 759 - 842
Target Start/End: Original strand, 16462968 - 16463050
Alignment:
Q  759 gttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  16462968 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctct 16463050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 758 - 843
Target Start/End: Complemental strand, 46691559 - 46691475
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||||||||||||||||  |||||| ||||| |||||||||  ||||||||| ||| ||||| ||||||||||||||||||||    
T  46691559 tgttagataataaagtattgaacttaagttattggacctttatactagtaagttagagtccatta-gttttattatatattctctt 46691475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 758 - 835
Target Start/End: Original strand, 50297460 - 50297537
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatat 835  Q
    |||||||||||||||||||| ||||||| ||||||  |||||||| ||||||||| ||| ||||| ||||||||||||    
T  50297460 tgttagataataaagtattgtgcttaagttattgagtctttatattagtaagttagagttcattatgttttattatat 50297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 758 - 842
Target Start/End: Complemental strand, 18088244 - 18088161
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    |||| ||||||||||||||| ||||||||||||   ||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  18088244 tgttggataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattagg-tttattatatattctct 18088161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 50294658 - 50294741
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||| ||||    
T  50294658 tgttagatgataaagtattg-gcttaagttattga-cctttatattaataagttagagtccattaggttttattatatattatctt 50294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 42530590 - 42530674
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||||||||||||||||  ||| || || ||| | ||||||| ||||| ||| ||| ||||||||||||||||||||||||||    
T  42530590 tgttagataataaagtattggacttgagttagtga-cttttatattagtaaattaaagttcattaggttttattatatattctctt 42530674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 758 - 837
Target Start/End: Complemental strand, 814498 - 814419
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatat 837  Q
    ||||||||||||||||||||  |||||| |||||  | ||||||| ||||||||| ||| ||||||||||  ||||||||    
T  814498 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgttatatat 814419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 827
Target Start/End: Original strand, 814260 - 814329
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttt 827  Q
    ||||||||||||||||||||  |||||| |||||  | ||||||| ||||||||| ||| ||||||||||    
T  814260 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggttt 814329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 16871651 - 16871736
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||||||||| ||||    
T  16871651 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattatatattatctt 16871736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 758 - 841
Target Start/End: Original strand, 16543360 - 16543443
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctc 841  Q
    ||||||||||||||||| ||  |||||| |||||  | ||||||| ||||||||| ||| ||||| ||||||||||||||||||    
T  16543360 tgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctc 16543443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 765 - 843
Target Start/End: Original strand, 16869513 - 16869591
Alignment:
Q  765 taataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||||||||||| ||||||| |||||  | ||||||| ||||||||| ||| |||||| |||||||||||| ||||||    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctctt 16869591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 842
Target Start/End: Original strand, 54148272 - 54148358
Alignment:
Q  755 atgtgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctct 842  Q
    ||||||||||||| |||| |||| ||||||||||||   | ||||||| ||||||||| ||| || || | |||||||||||||||||    
T  54148272 atgtgttagataacaaagcattgagcttaagctattaggcttttatattagtaagttagagtccaata-gatttattatatattctct 54148358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 843
Target Start/End: Original strand, 37945519 - 37945569
Alignment:
Q  793 acctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||| ||||||||| ||| |||||  |||||||||||||||||||    
T  37945519 acctttatattagtaagttagagtccattaaattttattatatattctctt 37945569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 11187 - 11272
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||| ||||| |||| || |||||| ||  ||||| ||||||||| ||| ||||| |||||||| |||||||||||    
T  11187 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctctt 11272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 843
Target Start/End: Original strand, 43615458 - 43615543
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    |||||||||||||| |||||  ||| || |||||| | ||||||| ||||||||| ||| |||||| |||||||||||||| ||||    
T  43615458 tgttagataataaaatattgaactttagttattgagcttttatattagtaagttagagtccattagattttattatatattttctt 43615543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 761 - 838
Target Start/End: Original strand, 33199412 - 33199490
Alignment:
Q  761 tagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagta-cattaggttttattatatatt 838  Q
    |||||||||||||||||  |||||| |||||| | ||||||| ||||||| | ||||  ||||||||||||||||||||    
T  33199412 tagataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatt 33199490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 843
Target Start/End: Original strand, 24137600 - 24137683
Alignment:
Q  760 ttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattctctt 843  Q
    ||||| |||||||||||| |||| || |||||  |||||| |  ||||||||| |||  |||||||||||||||||||||||||    
T  24137600 ttagacaataaagtattgagcttcagttattgggcctttacactagtaagttagagtctattaggttttattatatattctctt 24137683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 758 - 840
Target Start/End: Complemental strand, 406356 - 406274
Alignment:
Q  758 tgttagataataaagtattgcgcttaagctattgaacctttatatcagtaagttatagtacattaggttttattatatattct 840  Q
    |||||||||||||||||||  | ||||| |||||  ||||||||| || |||||| ||| | ||| |||||||||||||||||    
T  406356 tgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattct 406274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 843
Target Start/End: Complemental strand, 14639 - 14552
Alignment:
Q  757 gtgttagataataaagtattgcgcttaagctattgaacctttat-atcagtaagtt-atagtacattaggttttattatatattctctt 843  Q
    ||||||||||||||||||||| |||||||||||||  ||||||| || | |||||| |||||   |||||||||| |||||||||||||    
T  14639 gtgttagataataaagtattgggcttaagctattgggcctttatcattactaagttcatagtctgttaggtttta-tatatattctctt 14552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University