View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_20 (Length: 453)
Name: NF17209_high_20
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 47493234 - 47492840
Alignment:
| Q |
1 |
ctttaaataatatttaaggtggtagattaatccttnnnnnnnnttgtagattagtggtaagaatttaatcttgtaatcttaagatacgtttaagttttaa |
100 |
Q |
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| T |
47493234 |
ctttaaataatatttaaggtggtagattaatccttaaaaaaaatggtagattagtggtaagagtttaatcttataatcttaagatacgtttaagttttaa |
47493135 |
T |
|
| Q |
101 |
atgatcatacaattgttatcaatgacacaaaaattccccaattccccggcccttcaatcagattttgcacagaattcaaacaaacaatttgtaggtttaa |
200 |
Q |
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| T |
47493134 |
atgatcatacaattgttatcaatgacacaaaaattccccaat----------------cagattttgcacagaattcaaacaaacaatttgtaggtttaa |
47493051 |
T |
|
| Q |
201 |
cattgggtttattttgagacacattttggatggattcaataaatccaagtatgcgacaaggaaagtaaacaattcaaaactcgcatgtttgttatgcatc |
300 |
Q |
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| T |
47493050 |
cattgggtttattttgagacacattttggatggattcaataaatccaagtatgcgacaaggaaagtaaacaattcaaaactcgcatgtttgttatgcatc |
47492951 |
T |
|
| Q |
301 |
tccgccctctttcatttttcatgagt---ttatataaggtggtggaaccatcggttcaaatcatctttataagcagaactactaaaatataatcaagtac |
397 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
47492950 |
tccgccctctttcatttttcatgagtttattatataaggtggtgg-accatcggttcaaatcatctttataaacagaactactaaaatataatcaatttc |
47492852 |
T |
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