View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_28 (Length: 420)
Name: NF17209_high_28
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 29138238 - 29138610
Alignment:
| Q |
13 |
aatatgcatgtctaaatttctccatttgagctatgcataaaagagttttcattgttgaaaaattaagaaaaacatagagagaaatttagatgagatgaat |
112 |
Q |
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| T |
29138238 |
aatatgcatgtctaaatttctccatttgagctatacataaaagagttttcactgttgaaaaattaagaaaaacgtagagagaaatttagatgagatgaat |
29138337 |
T |
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| Q |
113 |
ttgaatgataaaatgtcatacattttgtttagtcgataaaagatcacactttatttgttcatgtgatataaatgagatgattcatttctccat----ttg |
208 |
Q |
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| T |
29138338 |
ttgaatgataaaatgtcatacattttgtttagtggataaaagatcacactttatttgttcatgtgatataaatgagatgattcatttctccatttaattg |
29138437 |
T |
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| Q |
209 |
agctgtatatccatactgcatatctaattgatattttttaagacttctgagggacaacagaaaagaaaggannnnnnnnnnnnngaaatcaagcgtagtt |
308 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29138438 |
agctgtatatacatactgcatatctaattgatattttttaagacttctgagggacaacagaaaagaaagga-tttttattttttgaaatcaagcgtagtt |
29138536 |
T |
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| Q |
309 |
aagacattcaacatgcatccaccatagtagcctttggcatcttatctagttatttcttttcttataatttatat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29138537 |
aagacattcaacatgcatccaccatagtagcctttggcatcttatctagttatttcttttcttataatttatat |
29138610 |
T |
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