View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_30 (Length: 388)
Name: NF17209_high_30
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 43377824 - 43377453
Alignment:
| Q |
1 |
cttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaa |
100 |
Q |
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| T |
43377824 |
cttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaa |
43377725 |
T |
|
| Q |
101 |
caaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaacc |
200 |
Q |
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| T |
43377724 |
caaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgtttctttccaatacctccattgaacatgagaaacc |
43377625 |
T |
|
| Q |
201 |
ttctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttttatgatgatcttt |
300 |
Q |
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| T |
43377624 |
ttctttcaagtccaactaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctccgatgttttatgatgatcttt |
43377525 |
T |
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| Q |
301 |
tggccaaccaattgcacttatatcatatccatcaagaactacaaatctatattccgggacgggagaaaattc |
372 |
Q |
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| T |
43377524 |
tggccaaccaattgcacttatatcatatccatcaagaactacaaatctatattccgggacgggagaaaattc |
43377453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 34428800 - 34428460
Alignment:
| Q |
14 |
tatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaacaaaccacaactt |
113 |
Q |
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| T |
34428800 |
tatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatctagaggcagatggcatgtgacaaccactt |
34428701 |
T |
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| Q |
114 |
tttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaaccttctttcaagtcc |
213 |
Q |
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| ||||||||||| ||||| || || |||||| || |||||||||||| |||| |||||||| |||||| || ||||| ||||||||||||||||| || |
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| T |
34428700 |
tctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgttaaacataagaaaccttctttcaagccc |
34428601 |
T |
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| Q |
214 |
aaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttttatgatgatcttttggccaaccaatt |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||| | || ||||||| ||||| ||||||| ||||||| | ||||||||||| |
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| T |
34428600 |
ctttaaattatttggactattcttatcttcatttggattcttctccctaagcaatttcaaggcctccaatgtttttggatgatcctgaggccaaccaatg |
34428501 |
T |
|
| Q |
314 |
gcacttatatcatatccatcaagaactacaaatctatattc |
354 |
Q |
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||||| || ||||| | ||| |||||||||||||||||||| |
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| T |
34428500 |
gcactgatgtcatagctatccagaactacaaatctatattc |
34428460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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