View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_31 (Length: 382)
Name: NF17209_high_31
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 126 - 367
Target Start/End: Original strand, 44989164 - 44989405
Alignment:
| Q |
126 |
tagttaatttctggaagagatgatccgaattagcatcaaccactgtatggaatatggaggcagaactatagttatccgtgcctagctttaatactaaatt |
225 |
Q |
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| T |
44989164 |
tagttaatttctggaagagatgatccgaattagcatcaaccactgtatggaatatggaggcagaactatagttatccgtgcctagctttaatactaaatt |
44989263 |
T |
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| Q |
226 |
caaagaaatattgtatttcaaactgaggtagaaaattagaatacacaatcccctctgaaaaggagataagacatgaatctgttgtagttatttgtcatca |
325 |
Q |
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| T |
44989264 |
caaagaaatattgtatttcaaactgaggtagaaaattagaatacacaatcccctctgaaaaggagataagacatgaatctgttgtagttatttgtcatca |
44989363 |
T |
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| Q |
326 |
acctctaagaaatattacacttgtcactgctttgtactatct |
367 |
Q |
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| T |
44989364 |
acctctaagaaatattacacttgtcactactttgtactatct |
44989405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 44988951 - 44988994
Alignment:
| Q |
78 |
atgctgttgttgtgtgctaggttgtgaacctgtcttttggttta |
121 |
Q |
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| T |
44988951 |
atgctgttgttgtgtgctaggttgtgaacctgtcttttggttta |
44988994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 44988840 - 44988884
Alignment:
| Q |
19 |
gtttattctttagtaactttgaaccttgtaatttatcgatttgga |
63 |
Q |
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| T |
44988840 |
gtttattctttagtaactttgaaccttgtaatttattgatttgga |
44988884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 44988893 - 44988932
Alignment:
| Q |
24 |
ttctttagtaactttgaaccttgtaatttatcgatttgga |
63 |
Q |
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| T |
44988893 |
ttctctagtaactttgaaccttgtaatttatcgatttgga |
44988932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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