View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_33 (Length: 376)
Name: NF17209_high_33
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_33 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 35 - 371
Target Start/End: Original strand, 37895951 - 37896287
Alignment:
| Q |
35 |
cgcataaactaattaaaagacaatggtagcacctttgttagcatttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctccact |
134 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37895951 |
cgcataaactaattaagagacaatggtagcacctttgttagcatttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctccact |
37896050 |
T |
|
| Q |
135 |
tttaaacaccaacccaacctcaagaccaccttctctatctccactttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtcta |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896051 |
tttaaacaccaacccaacctcaagaccaccttctctatctccactttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtcta |
37896150 |
T |
|
| Q |
235 |
ccaaatccaaaatctgtctcataaacattaaacttaggtgaacctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccatt |
334 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896151 |
ccaaatccaaaatcagtctcataaacattaaacttaggtgatcctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccatt |
37896250 |
T |
|
| Q |
335 |
ctcctacatctttaaaaggttcatttttcatctcact |
371 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
37896251 |
ctcctacatctttaaaaggttcatttttcatttcact |
37896287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 142 - 371
Target Start/End: Complemental strand, 37959144 - 37958915
Alignment:
| Q |
142 |
accaacccaacctcaagaccaccttctctatctccactttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctaccaaatc |
241 |
Q |
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||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| | ||||||| |
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|
| T |
37959144 |
accaacccaacctcaagtccaccttctctattttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttagcaggttttccaaatc |
37959045 |
T |
|
| Q |
242 |
caaaatctgtctcataaacattaaacttaggtgaacctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctac |
341 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||| | |
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| T |
37959044 |
caaaatcagtctcataaacattaaacttaggcgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccat |
37958945 |
T |
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| Q |
342 |
atctttaaaaggttcatttttcatctcact |
371 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
37958944 |
atctttaaaaggttcatttttcatttcact |
37958915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 37953399 - 37953267
Alignment:
| Q |
143 |
ccaacccaacctcaagaccaccttctctatctccactttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctaccaaatcc |
242 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||| | |||||||| |
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| T |
37953399 |
ccaacccaacctcaagtccaccttctctatctccactttcagcaatagacatacactttaatgaatgcatcatttcaactttaactggttttccaaatcc |
37953300 |
T |
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| Q |
243 |
aaaatctgtctcataaacattaaacttaggtga |
275 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
37953299 |
aaaatcagtctcataaacattaaacttaggtga |
37953267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 275
Target Start/End: Original strand, 39711739 - 39711977
Alignment:
| Q |
40 |
aaactaattaaaagacaatggtagcacctttgttagca---tttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctccacttt |
136 |
Q |
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|||||||||||| || ||| |||||| |||||||| | ||| ||| |||||||||| |||| ||| | || | | ||||||||||| || |||||| |
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| T |
39711739 |
aaactaattaaatgataattgtagcatctttgttactaatatttaaaaacttcaagtccttgttgaataagagaagagaaatattcaaactcctcacttt |
39711838 |
T |
|
| Q |
137 |
taaacaccaacccaacctcaagaccaccttctctatctccactttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctacc |
236 |
Q |
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||| |||||||||| |||||| |||||||||| ||||||||||||||||| ||||| || |||||| | ||||||||| ||||||||||||||| | || |
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| T |
39711839 |
taagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagagacacacccttaaatgcatgcaccatctcaactttaacaggttttcc |
39711938 |
T |
|
| Q |
237 |
aaatccaaaatctgtctcataaacattaaacttaggtga |
275 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
39711939 |
aaatccaaaattggtctcataaacattaaacttaggtga |
39711977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 11527401 - 11527596
Alignment:
| Q |
77 |
atttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctccacttttaaacaccaacccaacctcaagaccaccttctctatctcc |
176 |
Q |
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|||| |||||||||||||| |||| ||| | || | | |||||||||||||| ||||||||| |||||||||| |||||| |||||||||| |||||| |
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| T |
11527401 |
attttaaagcttcaagtccttgttgaatgagagaagataaatattcaaattcctcacttttaagtaccaacccaaactcaagtccaccttctccatctcc |
11527500 |
T |
|
| Q |
177 |
actttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctaccaaatccaaaatctgtctcataaacattaaacttagg |
272 |
Q |
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||||||||||| ||||| | | || | | ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |
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| T |
11527501 |
actttcagcaagagacacagccatagatggatgcaccatctcaactttaacaggtcttccaaatccaaattcggtctcataaacattaaatttagg |
11527596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 261314 - 261254
Alignment:
| Q |
40 |
aaactaattaaaagacaatggtagcacctttgttagcatttcaaagcttcaagtccatgtt |
100 |
Q |
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|||||||||||| || |||||||||| |||||||| ||| |||||||||||||| |||| |
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| T |
261314 |
aaactaattaaatgataatggtagcatctttgttaatgtttaaaagcttcaagtccttgtt |
261254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 2828510 - 2828450
Alignment:
| Q |
40 |
aaactaattaaaagacaatggtagcacctttgttagcatttcaaagcttcaagtccatgtt |
100 |
Q |
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|||||||||||| || |||||||||| |||||||| ||| |||||||||||||| |||| |
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| T |
2828510 |
aaactaattaaatgataatggtagcatctttgttaatgtttaaaagcttcaagtccttgtt |
2828450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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